Pairwise Alignments

Query, 552 a.a., DNA repair protein RecN (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 557 a.a., factor used in recombination and DNA repair from Pseudomonas putida KT2440

 Score =  459 bits (1181), Expect = e-133
 Identities = 250/552 (45%), Positives = 344/552 (62%), Gaps = 1/552 (0%)

Query: 1   MLCQLSINNFAIVRFLELDFSPGMTSITGETGAGKSIAIDALGLCLGNRADASSVRPGAS 60
           ML  LSI+N+AIV  L+L+ + GM+ ITGETGAGKSI +DALGL LG+RAD+  VRPG  
Sbjct: 1   MLVHLSIHNYAIVEHLDLEIARGMSVITGETGAGKSIMLDALGLALGDRADSGVVRPGTD 60

Query: 61  KTEVSARFSLHDVPLAKRWLEDNDLELDDECILRRTIGSDGRSRAYINGNPVPLTQLKLL 120
           K ++ A F L D+P A  WL + DL+ +  CILRR I ++GRSR YING P PL  LK L
Sbjct: 61  KADILATFDLVDIPEAHTWLAERDLDNEGLCILRRVITAEGRSRGYINGTPCPLGDLKAL 120

Query: 121 GQLLVGIHGQHAHHAMLKSEHQLTLLDSYANHRLLIDTVTASYQRCKQIEAELKQLEASQ 180
           G+LL+ IH QH H ++LK++    LLD YA    L   V  + +R  Q   EL++L  S 
Sbjct: 121 GELLIDIHSQHEHQSLLKTDTHRRLLDEYAGAVDLARQVQLAAKRWNQTRLELERLSNSG 180

Query: 181 HERIARKQLVQYQVEELDEFDLKVGEFEEIEQEHKRLANGTELVDSCQASLYLLTDGEES 240
            E+ AR QL+ YQ+EELD   L   E E++EQEHK L +   L   C+  +   ++ +  
Sbjct: 181 DEQRARHQLLSYQLEELDNLGLGEHELEQLEQEHKNLTSAEALFGICRQVIDQCSESDSG 240

Query: 241 NIESLLNKVVSLAENLQSYDPALTNVSTMLNEALIQVQESAGELQHYLSKLELDPAYFAY 300
           N+ S L   ++      +   AL+  + ++  A IQV+E+ GEL  +L   + DP     
Sbjct: 241 NVLSALTSSLNRLGAATNSPKALSEAANLIASAQIQVEEAVGELNRFLDNFDADPIRLQA 300

Query: 301 LEERLSKAMQLARKHHVSPDKLAEHHLALKAELTTLDDDETKLEEIQLQVEASKSAYLAN 360
           LEERL     LARKH V P +L      L  EL  L+  +  +E +  ++ A    Y   
Sbjct: 301 LEERLDTIYTLARKHRVHPTELPHLQQQLMEELEGLNASDESIERLGEELAAYAQHYKEK 360

Query: 361 AQKLSQSRARYAKELDKLVTQSIHELNMPKGKFTIEVNFNPEI-MSVNGSDNIEFMVTTN 419
           A++LS  R + A++L   V Q I  L MP G+F IE+  N    +S +G + IE +V+ N
Sbjct: 361 ARELSGLRQQAAQQLAGAVEQEIQRLGMPGGRFCIELTANEGTELSPHGLEQIELLVSAN 420

Query: 420 PGQPLQPISRVASGGELSRIGLGIQVITAKKVATPTLIFDEVDVGISGPTAAVVGRMLRS 479
           PGQPL+ +++VASGGELSRI L IQVITA+    PTL+FDEVDVGI GPTA +VG++LR 
Sbjct: 421 PGQPLKALAKVASGGELSRISLAIQVITAQTSRIPTLVFDEVDVGIGGPTAEIVGQLLRR 480

Query: 480 LGESTQVLCVTHLPQVAGNGHQHMFVNKFNKAGSTETTMTPLDKEQRIQELARLLGGDTI 539
           LGE  QVL VTHLPQVA  GH H+FV+K   + +T T +  L K +R++E+AR+LGG  +
Sbjct: 481 LGERGQVLTVTHLPQVAAQGHHHLFVHKVRNSDTTHTAVASLGKRERVEEVARMLGGIDL 540

Query: 540 TSNTLANARELL 551
           T  +LA+AR+++
Sbjct: 541 TKESLAHARKMV 552