Pairwise Alignments

Query, 552 a.a., DNA repair protein RecN (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 557 a.a., DNA repair protein RecN from Pseudomonas sp. RS175

 Score =  475 bits (1222), Expect = e-138
 Identities = 254/552 (46%), Positives = 353/552 (63%), Gaps = 1/552 (0%)

Query: 1   MLCQLSINNFAIVRFLELDFSPGMTSITGETGAGKSIAIDALGLCLGNRADASSVRPGAS 60
           ML  LS++N+AIV  L+L+   GM+ ITGETGAGKSI +DALGL LG+RAD+  VR GA 
Sbjct: 1   MLVHLSVHNYAIVEHLDLELDRGMSVITGETGAGKSIMLDALGLTLGDRADSGVVRSGAD 60

Query: 61  KTEVSARFSLHDVPLAKRWLEDNDLELDDECILRRTIGSDGRSRAYINGNPVPLTQLKLL 120
           K ++ A F L D+P A  WL + DL+ D  CILRR I ++GRSR YING P PL  LK L
Sbjct: 61  KADILATFDLVDIPEASAWLAERDLDTDGLCILRRVITAEGRSRGYINGTPCPLGDLKAL 120

Query: 121 GQLLVGIHGQHAHHAMLKSEHQLTLLDSYANHRLLIDTVTASYQRCKQIEAELKQLEASQ 180
           G+LL+ IH QH H ++LK++    LLD YA    L   V  + QR +Q   EL +L  S 
Sbjct: 121 GELLIDIHSQHEHQSLLKTDTHRRLLDEYAGATDLARQVQLAAQRWRQTRQELDRLSNSG 180

Query: 181 HERIARKQLVQYQVEELDEFDLKVGEFEEIEQEHKRLANGTELVDSCQASLYLLTDGEES 240
            E+ AR QL+ YQ+EEL+   L   E EE+EQEHK L N   L+  C+  +   ++ +  
Sbjct: 181 DEQRARHQLLSYQLEELENLALGENELEELEQEHKNLTNAETLLGICRQVVEQCSESDSG 240

Query: 241 NIESLLNKVVSLAENLQSYDPALTNVSTMLNEALIQVQESAGELQHYLSKLELDPAYFAY 300
           N+ S L   ++   ++ +   +L+  + +L  A IQV+E+ GEL  +L   + DPA   Y
Sbjct: 241 NVLSALTASLNRLTSVNNSVGSLSEATNLLTSAQIQVEEAVGELNRFLDHFDADPARLQY 300

Query: 301 LEERLSKAMQLARKHHVSPDKLAEHHLALKAELTTLDDDETKLEEIQLQVEASKSAYLAN 360
           LEERL     LARKH V P  + E    L  EL TL+ ++  +E +  ++ +    Y   
Sbjct: 301 LEERLDTIYTLARKHRVQPTDVIELQQRLLDELETLNANDESIERLGDELASYARHYQEK 360

Query: 361 AQKLSQSRARYAKELDKLVTQSIHELNMPKGKFTIEVNFNP-EIMSVNGSDNIEFMVTTN 419
           A++LS+ R + A +L   V Q I  L MP G+FTIE++ N  + +  NG + +E +V+ N
Sbjct: 361 AKELSELRHQAATKLASAVEQEIQRLGMPGGRFTIELHPNAGDELQPNGLEQVELLVSAN 420

Query: 420 PGQPLQPISRVASGGELSRIGLGIQVITAKKVATPTLIFDEVDVGISGPTAAVVGRMLRS 479
           PGQPL+ +++VASGGELSRI L IQVITA+    PTL+FDEVDVGI GPTA +VG++LR 
Sbjct: 421 PGQPLKALAKVASGGELSRISLAIQVITAQTSRVPTLVFDEVDVGIGGPTAEIVGQLLRR 480

Query: 480 LGESTQVLCVTHLPQVAGNGHQHMFVNKFNKAGSTETTMTPLDKEQRIQELARLLGGDTI 539
           LGE  QVL VTHLPQVA  GHQH+FV+K      T T ++ L+K +R++E+AR+LGG  +
Sbjct: 481 LGERGQVLTVTHLPQVAAQGHQHLFVHKVRGEEDTRTAVSKLNKSERVEEVARMLGGIDL 540

Query: 540 TSNTLANARELL 551
           T  +LA+A++++
Sbjct: 541 TKESLAHAKKMV 552