Pairwise Alignments

Query, 552 a.a., DNA repair protein RecN (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 557 a.a., DNA repair protein RecN from Pseudomonas fluorescens SBW25

 Score =  464 bits (1194), Expect = e-135
 Identities = 245/552 (44%), Positives = 353/552 (63%), Gaps = 1/552 (0%)

Query: 1   MLCQLSINNFAIVRFLELDFSPGMTSITGETGAGKSIAIDALGLCLGNRADASSVRPGAS 60
           ML  LS++N+AIV  L+L+   GM+ ITGETGAGKSI +DALGL LG+RAD+  VRPGA 
Sbjct: 1   MLVHLSVHNYAIVEHLDLELDRGMSVITGETGAGKSIMLDALGLTLGDRADSGVVRPGAD 60

Query: 61  KTEVSARFSLHDVPLAKRWLEDNDLELDDECILRRTIGSDGRSRAYINGNPVPLTQLKLL 120
           K ++ A F L D+P A+ WL + DL  +  CILRR I ++GRSR YING P PL  LK L
Sbjct: 61  KADILATFDLADIPEAEAWLAERDLNNEGPCILRRVITAEGRSRGYINGTPCPLGDLKAL 120

Query: 121 GQLLVGIHGQHAHHAMLKSEHQLTLLDSYANHRLLIDTVTASYQRCKQIEAELKQLEASQ 180
           G+LL+ IH QH H ++LK++    LLD YA    L   V  + QR +Q   EL++L  S 
Sbjct: 121 GELLIDIHSQHEHQSLLKTDTHRRLLDEYAGATDLARQVQLAAQRWRQTRQELERLSNSG 180

Query: 181 HERIARKQLVQYQVEELDEFDLKVGEFEEIEQEHKRLANGTELVDSCQASLYLLTDGEES 240
            E+ AR QL+ YQ+EEL+   L   E E++EQEHK L N   L+  C+  +   ++ +  
Sbjct: 181 DEQRARHQLLSYQLEELESLGLGETELEQLEQEHKNLTNAETLLGICRQVVEQCSESDSG 240

Query: 241 NIESLLNKVVSLAENLQSYDPALTNVSTMLNEALIQVQESAGELQHYLSKLELDPAYFAY 300
           N+ + L   ++   ++ +   +L+  +T+L  A IQV+E+ GEL  +L   + DPA    
Sbjct: 241 NVLNALTASLNRLSSVNNASGSLSEATTLLTSAQIQVEEAVGELNRFLDHFDADPARLQE 300

Query: 301 LEERLSKAMQLARKHHVSPDKLAEHHLALKAELTTLDDDETKLEEIQLQVEASKSAYLAN 360
           +EERL     LARKH + P ++A     L  E+ TL+ ++  +E +  ++ +    Y   
Sbjct: 301 IEERLDTIYTLARKHRIQPTEVATMQQKLLDEIETLNANDESIERLGDELASFARHYQEK 360

Query: 361 AQKLSQSRARYAKELDKLVTQSIHELNMPKGKFTIEVNFN-PEIMSVNGSDNIEFMVTTN 419
           A++LS  R + A  L   V   I  L MP G+FTIE++ +    +   G + +E +V+ N
Sbjct: 361 ARELSDLRHQAATGLASAVELEIQRLGMPGGRFTIELHASTSNELQPYGLEQVELLVSAN 420

Query: 420 PGQPLQPISRVASGGELSRIGLGIQVITAKKVATPTLIFDEVDVGISGPTAAVVGRMLRS 479
           PGQPL+ +++VASGGELSRI L IQVITA+    PTL+FDEVDVGI GPTA +VG++LR 
Sbjct: 421 PGQPLKALAKVASGGELSRISLAIQVITAQTSRVPTLVFDEVDVGIGGPTAEIVGQLLRR 480

Query: 480 LGESTQVLCVTHLPQVAGNGHQHMFVNKFNKAGSTETTMTPLDKEQRIQELARLLGGDTI 539
           LG+  QVL VTHLPQVA  GHQH+FV+K   + +T T ++ L+K +R++E+AR+LGG  +
Sbjct: 481 LGDRGQVLTVTHLPQVAAQGHQHLFVHKVRGSDATHTAVSKLNKSERVEEVARMLGGIDL 540

Query: 540 TSNTLANARELL 551
           T  +LA+A++++
Sbjct: 541 TKESLAHAKKMV 552