Pairwise Alignments

Query, 552 a.a., DNA repair protein RecN (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 552 a.a., DNA repair protein RecN from Methylophilus sp. DMC18

 Score =  371 bits (953), Expect = e-107
 Identities = 220/554 (39%), Positives = 317/554 (57%), Gaps = 9/554 (1%)

Query: 1   MLCQLSINNFAIVRFLELDFSPGMTSITGETGAGKSIAIDALGLCLGNRADASSVRPGAS 60
           ML  LSI +F IV  LEL+FS G T++TGETGAGKSI IDAL L LG R +    R G  
Sbjct: 1   MLQALSIRDFVIVDVLELEFSAGYTALTGETGAGKSILIDALSLSLGARNEGDVTRKGCD 60

Query: 61  KTEVSARFSLHDVPLAKRWLEDNDLELDDECILRRTIGSDGRSRAYINGNPVPLTQLKLL 120
           K E++  F +     A  WL   ++ +DD  ILRR I +DGRSRA+ING    + QL+ +
Sbjct: 61  KAEIATTFDISGNQAAADWLRAQEMAVDDSLILRRVIYADGRSRAFINGVSATVGQLREI 120

Query: 121 GQLLVGIHGQHAHHAMLKSEHQLTLLDSYANHRLLIDTVTASYQRCKQIEAELKQLEASQ 180
           G+ L+ I+ Q+AHH++LK   Q  +LD+YA    L   V  SY+   Q+  +    E + 
Sbjct: 121 GETLIDIYSQNAHHSLLKMATQREILDAYAQAVPLAKDVAKSYKAWFQVHQQQLAFEKNA 180

Query: 181 HERIARKQLVQYQVEELDEFDLKVGEFEEIEQEHKRLANGTELVDSCQASLYLLTDGEES 240
            E      L++    EL +      E+  ++QEH RL++G  L+   +ASL ++++GEE 
Sbjct: 181 SEYADELALLRDSTRELSQLGFAAEEWLALQQEHVRLSHGASLLTGMEASLQMMSEGEEV 240

Query: 241 NIESLLNKVVSLAENLQSYDPALTNVSTMLNEALIQVQESAGELQHYLSKLELDPAYFAY 300
           N   LL++V      LQ  D  L  ++  ++ A+IQ++E++  L  +L K ELDP   A 
Sbjct: 241 NALDLLSQVQGKLAELQVIDAGLQPIAETVDSAVIQLEEASRALNRHLQKSELDPERLAE 300

Query: 301 LEERLSKAMQLARKHHVSPDK---LAEHHLALKAELTTLDDDETKLEEIQLQVEASKSAY 357
           +E R+      ARK+ V PD+   L +   +  AEL T  DD      +  QV+A+   Y
Sbjct: 301 VESRIQTIHTAARKYRVKPDELPALLQQQQSRMAELETFADDGA----LAKQVQAAWQTY 356

Query: 358 LANAQKLSQSRARYAKELDKLVTQSIHELNMPKGKFTIEVNFNPEIMSVNGSDNIEFMVT 417
              A  LS  R + A+ L + +T  +  L+   G+F+  V+  P   +  G + +EFMV 
Sbjct: 357 QQQAAALSAVRHQAAQALSETITGQMQALSFKGGRFS--VSLTPGEPAAYGLEQVEFMVA 414

Query: 418 TNPGQPLQPISRVASGGELSRIGLGIQVITAKKVATPTLIFDEVDVGISGPTAAVVGRML 477
            + G   +P+++VASGGELSRI L +QV TA     P +IFDEVDVGI G  A VVGR+L
Sbjct: 415 GHAGVEPRPLNKVASGGELSRISLALQVTTASLGTVPCMIFDEVDVGIGGGVAEVVGRLL 474

Query: 478 RSLGESTQVLCVTHLPQVAGNGHQHMFVNKFNKAGSTETTMTPLDKEQRIQELARLLGGD 537
           R LG   QVL +THL QVA    QH+ V+K  + G T + +  L+  +RI+E+AR+LGG 
Sbjct: 475 RELGRHRQVLVITHLAQVASQAQQHLQVSKSEQQGVTLSRIHALNAHERIEEIARMLGGL 534

Query: 538 TITSNTLANARELL 551
            IT  T  +A+E+L
Sbjct: 535 QITEATRQHAKEML 548