Pairwise Alignments

Query, 449 a.a., RNA methyltransferase, TrmA family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 450 a.a., 23S rRNA methyltransferase from Pseudomonas simiae WCS417

 Score =  313 bits (802), Expect = 7e-90
 Identities = 175/431 (40%), Positives = 259/431 (60%), Gaps = 10/431 (2%)

Query: 18  KQSFSVQQLDHLGAGIAQHQGKVVFIPGALPNETVQAQLTEQKKNYARAKLIKVETPSTE 77
           KQ  ++++L + G GI   +G+  F+ GAL  E V+A++         A+  +V + S  
Sbjct: 26  KQRLTIERLANDGRGIVFFEGRTWFVNGALAGEEVEARVLGTHGKIVEARTERVFSASEL 85

Query: 78  RVSPLCPHYHTCGGCDLQHMSLTAQREHKSAALVDIMAKFAGAEGS-LAPALSGEGWHYR 136
           R    C H+  CGGC +QH+    Q   K   L + +++ AG E    A  LSG  + YR
Sbjct: 86  RRPAPCAHFGRCGGCSVQHLPHGEQLALKQRMLAEQLSRVAGVEPQEWAAPLSGAEFGYR 145

Query: 137 RRARLATLFDKNTKQLSLGFRASSSSHVVSITECLVLAKPLSDLIAPFAKLLNQLAAKSS 196
           RRAR+A  +D   KQL +GFRA +S  +V+I EC VL + L  ++     +L +L+   +
Sbjct: 146 RRARVAVRWDARAKQLEVGFRAVASQDIVAIDECPVLVQALQPIMQRLPNMLRRLSKPQA 205

Query: 197 LGHLELIAADNGHFAVIRITKSLNDKDMAKLAQFAEQHQIHICLQDNEGEFHGVNGTLLL 256
           LGH+EL +  +    ++R    L++ D+  L +F   H+  + L       HG      +
Sbjct: 206 LGHVELFSGTSVA-VLLRHIAPLSEADLQVLKEFCAFHEAQLWL-------HGEGQPEPV 257

Query: 257 PVYQLLDDKTDVQPVSLTFTPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGN 316
               +L  +     + L + PG+FVQVNA +N+AMVAQAL+WLAPQP ER+LDLFCG+GN
Sbjct: 258 EADSVLGFRLSHWDLELAYRPGDFVQVNAGVNEAMVAQALEWLAPQPDERVLDLFCGLGN 317

Query: 317 FSLPLARMGADVIGVEGVPEMVSQARENAVANGLSNLTFYHGDLSADLSSEPWMGK-IDK 375
           F+LPLAR   +V+ VEGV  MV +A  NAV+N L N+ F+  DLS  L+   W  +    
Sbjct: 318 FALPLARQVREVVAVEGVQTMVERAAVNAVSNDLHNVQFFQADLSQPLTDAEWAKQGFSA 377

Query: 376 LLLDPARAGAYESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQ 435
           +LLDP R GA E ++ L  +  +++VYVSCNPA+LARD+  L+++GY+L++ G++DMFPQ
Sbjct: 378 VLLDPPRDGALEVVRKLATLGAKRLVYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQ 437

Query: 436 THHIEAMALFE 446
           T H+EAMALFE
Sbjct: 438 TAHVEAMALFE 448