Pairwise Alignments

Query, 449 a.a., RNA methyltransferase, TrmA family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

 Score =  323 bits (827), Expect = 9e-93
 Identities = 182/431 (42%), Positives = 259/431 (60%), Gaps = 10/431 (2%)

Query: 18  KQSFSVQQLDHLGAGIAQHQGKVVFIPGALPNETVQAQLTEQKKNYARAKLIKVETPSTE 77
           KQ   +++L   G GIA   G+  F+ GAL  E V+A++   +     A+L ++   + E
Sbjct: 28  KQRLDIERLAGDGRGIAFLDGRTWFVSGALAGEAVEARVLNARGKVVEARLERLLQAAPE 87

Query: 78  RVSPLCPHYHTCGGCDLQHMSLTAQREHKSAALVDIMAKFAGAEGSL-APALSGEGWHYR 136
           R    C +Y  CGGC+LQH+   AQ   K   L + + + AG +    A  LSG  + YR
Sbjct: 88  RREAPCRYYDRCGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPEFGYR 147

Query: 137 RRARLATLFDKNTKQLSLGFRASSSSHVVSITECLVLAKPLSDLIAPFAKLLNQLAAKSS 196
           RRAR+A  +D   +QL +GFRA +S  +++I +C VL +PL  ++     +L  L+   +
Sbjct: 148 RRARVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRSLSKPQA 207

Query: 197 LGHLELIAADNGHFAVIRITKSLNDKDMAKLAQFAEQHQIHICLQDNEGEFHGVNGTLLL 256
           LGH+EL +       ++R    L  +D A+L  F EQ    + LQ  EGE   V+     
Sbjct: 208 LGHVELFSG-TAEAVLVRHVAPLPAEDQARLQAFCEQANAQLWLQ-GEGEPAPVD----- 260

Query: 257 PVYQLLDDKTDVQPVSLTFTPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGN 316
           P  QL       Q + L + PG+FVQVNAQ+N AM+ QAL WLAPQ  ER+LDLFCG+GN
Sbjct: 261 PAAQLGFALAPWQ-LELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGLGN 319

Query: 317 FSLPLARMGADVIGVEGVPEMVSQARENAVANGLSNLTFYHGDLSADLSSEPWMGK-IDK 375
           F+LPLAR   +V+ VEGV  MV +A  NA  N + N  F+  DLS  L+   W  +    
Sbjct: 320 FALPLARQAREVVAVEGVQAMVDRAAANARNNNVHNARFFQADLSQPLAGTGWAAEGFSA 379

Query: 376 LLLDPARAGAYESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQ 435
           +LLDP R GA+E +Q + ++K R++VYVSCNPA+LARD+ VL+ +GY+L++ G++DMFPQ
Sbjct: 380 VLLDPPRDGAFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQ 439

Query: 436 THHIEAMALFE 446
           T H+EAMALFE
Sbjct: 440 TAHVEAMALFE 450