Pairwise Alignments

Query, 449 a.a., RNA methyltransferase, TrmA family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  229 bits (583), Expect = 2e-64
 Identities = 151/475 (31%), Positives = 246/475 (51%), Gaps = 45/475 (9%)

Query: 6   KAKPNSSKQLSAKQSFSVQQLDHLGAGIAQH-QGKVVFIPGALPNETVQAQLTEQKKNYA 64
           +A P S  ++  +   +V+ LD    GIA+   GKVVFI GALP E V   +  +K N+ 
Sbjct: 18  EAAPESPDRVLPEGWLAVESLDIDAQGIARRPDGKVVFIEGALPFEQVSVNVHRKKNNWE 77

Query: 65  RAKLIKVETPSTERVSPLCPHYH----TCGGCDLQHMSLTAQREHKSAALVDIMAKFAGA 120
              +  +   S++RV P CPH+      CGGC +QH+   AQ   K   L D +      
Sbjct: 78  AGTVTAIHRESSQRVRPGCPHFGLHAGACGGCKMQHLHEAAQVAVKQRVLEDNLWHLGKV 137

Query: 121 EG-SLAPALSGEGWHYRRRARLATLFDKNTKQLSLGFRASSSSHVVSITECLVLAKPLSD 179
              +L   + G  W YR RARL+        ++ +GF    S +V  +  C VL   +S 
Sbjct: 138 RAETLMRPIEGPAWGYRHRARLSVRHVHKKGEVLIGFHERKSRYVADMQVCPVLPPHVSA 197

Query: 180 LIAPFAKLLNQLAAKSSLGHLELIAADNGHFAVIRITKSLNDKDMAKLAQFAEQHQIHIC 239
           ++ P  +L+  + A+ +   +EL + D+    V+R  + L++ D+A+L  F  +H +   
Sbjct: 198 MLMPLRELIFGMDARETCPQIELASGDDVTALVLRHLEPLSEDDLARLRAFGARHGVQWW 257

Query: 240 LQDNEGEFHGVNGTLLLPVYQLLDDKTDVQP-------VSLTFTPGNFVQVNAQINKAMV 292
           LQ    +             +LLD+  +V         +++ F P +F QVN  IN+ +V
Sbjct: 258 LQAKGPD-----------TVKLLDEGGEVLSYALPEFGITMPFKPTDFTQVNPFINRVLV 306

Query: 293 AQALDWLAPQPGERILDLFCGMGNFSLPLARMGADVIGVEGVPEMVSQARENAVAN---- 348
            +AL  L  +  ER++D FCG+GNF+LP+A    +V+G+EG   +V+++REN   N    
Sbjct: 307 VRALRLLDARADERVIDWFCGLGNFTLPIATTAGEVLGIEGSEALVARSRENLAGNQAGR 366

Query: 349 --GLSNLTFYHGDLSADLSSEPWM--GKIDKLLLDPARAGAYESLQWLKKM--------- 395
              L+  TF   +L  +++ E  +  G   K L+DP R GA+   + +  +         
Sbjct: 367 DRPLAPTTFAARNL-FEMTPELLVADGVAQKWLVDPPREGAFALAKAIADLHQNPALRGG 425

Query: 396 --KPRQVVYVSCNPASLARDSAVLL-ERGYKLQKLGLIDMFPQTHHIEAMALFEL 447
              P+++VYVSCNPA+LARD+ +L+ + GY+    G+++MF  T H+E+MA+FEL
Sbjct: 426 WTPPQRIVYVSCNPATLARDAGLLVHQAGYRCVTAGVVNMFAHTAHVESMAVFEL 480