Pairwise Alignments

Query, 449 a.a., RNA methyltransferase, TrmA family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 433 a.a., 23S rRNA m(5)U1939 methyltransferase, SAM-dependent from Escherichia coli BL21

 Score =  372 bits (956), Expect = e-107
 Identities = 197/450 (43%), Positives = 280/450 (62%), Gaps = 18/450 (4%)

Query: 1   MAQFFKAKPNSSKQLSAKQSFSVQQLDHLGAGIAQHQGKVVFIPGALPNETVQAQLTEQK 60
           MAQF+ AK  ++ +     + SV  LD  G G+A+H GK +FIPG LP E  +  +TE K
Sbjct: 1   MAQFYSAKRRTTTRQII--TVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDK 58

Query: 61  KNYARAKLIKVETPSTERVSPLCPHYHTCGGCDLQHMSLTAQREHKSAALVDIMAKFAGA 120
           K YARAK+++  + S ER +P CPH+  CGGC  QH S+  Q+  KSAAL  +M      
Sbjct: 59  KQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLM------ 112

Query: 121 EGSLAPALSGEGWHYRRRARLATLFDKNTKQLSLGFRASSSSHVVSITECLVLAKPLSDL 180
           +  ++  ++   W YRRRARL+  +   T+QL +GFR + SS +V + +C +LA  L  L
Sbjct: 113 KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEAL 172

Query: 181 IAPFAKLLNQLAAKSSLGHLELIAADNGHFAVIRITKSLNDKDMAKLAQFAEQHQIHICL 240
           +      L  L A   LGH+EL+ A +G   ++R T  L+  D  KL +F+    + + L
Sbjct: 173 LPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYL 232

Query: 241 QDNEGEFHGVNGTLLLPVYQLLDDKTDVQPVSLTFTPGNFVQVNAQINKAMVAQALDWLA 300
             +      V+G +  P Y       D   + LTF+P +F+QVNA +N+ MVA+AL+ L 
Sbjct: 233 APDSEILETVSGEM--PWY-------DSNGLRLTFSPRDFIQVNAGVNQKMVARALELLD 283

Query: 301 PQPGERILDLFCGMGNFSLPLARMGADVIGVEGVPEMVSQARENAVANGLSNLTFYHGDL 360
            QP +R+LDLFCGMGNF+LPLA   A V+GVEGVP +V + ++NA  NGL N+TFYH +L
Sbjct: 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENL 343

Query: 361 SADLSSEPW-MGKIDKLLLDPARAGAYESLQWLKKMKPRQVVYVSCNPASLARDSAVLLE 419
             D++ +PW     DK+LLDPARAGA   +Q + K++P ++VYVSCNPA+LARDS  LL+
Sbjct: 344 EEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLK 403

Query: 420 RGYKLQKLGLIDMFPQTHHIEAMALFELAK 449
            GY + +L ++DMFP T H+E+M LF   K
Sbjct: 404 AGYTIARLAMLDMFPHTGHLESMVLFSRVK 433