Pairwise Alignments

Query, 409 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 453 a.a., ATP-dependent RNA helicase RhlE from Escherichia coli ECOR38

 Score =  394 bits (1012), Expect = e-114
 Identities = 203/406 (50%), Positives = 280/406 (68%), Gaps = 4/406 (0%)

Query: 1   MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60
           MSF +L L+  ++  +AE GY++PTPIQ +AIPA+L  +D+MA AQTGTGKTA F LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120
           Q L+         + +RAL+L PTRELA Q+ ++   Y+K  +IR  + +GGVSI  Q  
Sbjct: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120

Query: 121 VFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180
               G+DVL+ATPGRLLD   Q A+ L+Q+  LV DEADRMLDMGF+ +I+ VL ++PA+
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180

Query: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFVSHLV 240
           RQ LLFSAT  D I + ++ LL +P  IEVA+ NT + Q+ Q V+ +D  RK E +SH++
Sbjct: 181 RQNLLFSATFSDDIKNLAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240

Query: 241 RSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLV 300
              NWQQVL+F+RTK G + L  QLNK G+ + + HG+ SQGAR + L +FK G ++VLV
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300

Query: 301 ATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEV 360
           ATD+AARGLDI EL +V+N+ELP + EDY+HRIGRTGRA + G A++L   ++  LL ++
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360

Query: 361 ETLLDKRLPQQWYPGFEPDFNKMLPEPRRNSKAAQKQRAKKRALGG 406
           E LL K +P+   PG+EPD   +  EP +N +   +QR   R  GG
Sbjct: 361 EKLLKKEIPRIAIPGYEPD-PSIKAEPIQNGR---QQRGGGRGQGG 402