Pairwise Alignments

Query, 374 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 335 a.a., Transcriptional regulator, Cro/CI family from Pseudomonas putida KT2440

 Score =  100 bits (249), Expect = 6e-26
 Identities = 90/360 (25%), Positives = 155/360 (43%), Gaps = 34/360 (9%)

Query: 17  EAESTPDVTLGSVLKSAREQMGLSIAQTAVKLHLRPGIVENLEADDFSNIASSTYVRGYV 76
           E    P    G +L+ ARE+   S A+ A KL+L    + ++E   F  +   T+ RGY+
Sbjct: 7   EVAVAPGQNPGELLRLAREKRDWSQAEVARKLNLTVSSLNHVETGAFDKLPGHTFARGYI 66

Query: 77  KNYARMLGVDNA-LIEACLARQVPFVTQPPMQSFSR-KTTYQARDTKLKWLSFFIVIVLL 134
           + YA+++ +D A L++A             + S  R +   +     L+ +S  +++ ++
Sbjct: 67  RAYAKLMDLDQAALVDAFDRYTGTHAKGSDVHSLGRIEEPVRLSHNILRGVSLLLLVAVV 126

Query: 135 GLFVVWWMQRATLVTHVDISKPTAEEVAAANQTLPGDVLLTETDASARLSEIAVNGSMAT 194
           G    WW  + +L    +++K   E V   +            D + ++  +        
Sbjct: 127 GGGFFWWQDQGSL-RGKELAKIALEHVEVES-----------ADGTTQIHPL-------- 166

Query: 195 DGPVKDTDVSSIDPNTNVMTAMEGEQTANSSNESSRNSVAKPNQTVTASGAVQTPSTT-A 253
           D P +D  VS+     +   A+E  Q A     ++  +      T+  +     P+ + A
Sbjct: 167 DEP-EDQAVSAGQQPESAPLALE--QGAAEQPAAAEQAPVSSEATIATAPVQPAPAASPA 223

Query: 254 TVTVPVQNTASAQTQVTANASATNVTSPTTNAQTMPAVAGQSTLNIQLTGDCWINIVDAN 313
            VT PVQ TA A     A A A     P          AG + + IQ T DCW  + D N
Sbjct: 224 PVTPPVQATA-APAPAPAPAPAVAAVEPAA------VPAGSAKVAIQFTADCWTQVSDGN 276

Query: 314 GKAIVDGVRGAGANIQASGVLPFKVILGAPTVVSSFTVDGKAISLAEFPKGRVARLTIPQ 373
           GK +   ++  G N++ +G  PF V LG     +  + +G+A+ +A F  G  ARL + Q
Sbjct: 277 GKVLFSAIKRKGDNLELTGKPPFAVRLGFAR-GAQVSYNGQAVDVAPFTSGETARLKLGQ 335