Pairwise Alignments

Query, 374 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 334 a.a., FIG021952: putative membrane protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  132 bits (332), Expect = 1e-35
 Identities = 105/368 (28%), Positives = 164/368 (44%), Gaps = 63/368 (17%)

Query: 16  NEAESTPDVTLGSVLKSAREQMGLSIAQTAVKLHLRPGIVENLEADDFSNIASSTYVRGY 75
           NEA++T     G  L++AREQ+GLS    A +L L+   V ++E D   +  +ST++RGY
Sbjct: 10  NEAQTT-----GVRLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPSDLASTFLRGY 64

Query: 76  VKNYARMLGVDNALIEACLARQVPF--VTQPPMQSFSRKTTYQARDTKLKWLSFFIVIVL 133
           +++YAR++ V    +   L +Q P       PMQSFS     + RD  L   ++ ++ V+
Sbjct: 65  IRSYARLVHVPEEELLPGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMSFTWLVLFVV 124

Query: 134 LGLFVVWWMQRATLVTHVDISKPTAEEVAAANQTLPGDVLLTETDASARLSEIAVNGSMA 193
           +GL   WW Q           K   EE+               T A    +E+  +    
Sbjct: 125 VGLTGAWWWQN---------HKAQQEEIT--------------TMADQSTAELNADKDSG 161

Query: 194 TDGPVKDTDVSSIDPNTNVMTAMEGEQTANSSNESSRNSVAKPNQTVTASGAVQTPSTTA 253
              P+ DT  ++    T   TA                    P   V ++ A QTP+ TA
Sbjct: 162 QSVPL-DTGAATSQDTTPAQTA------------------PAPATPVDSTAATQTPAPTA 202

Query: 254 TVTVPVQNTASAQTQVTANASATNVTS---------PTTNAQTMPAVAGQSTLNIQLTGD 304
             T   QNT  A +Q   + +AT+            PT+ A      A  + L +  T D
Sbjct: 203 AAT---QNTVVAPSQANVDTAATSAAPAATETPSALPTSQAGVAAPAADPNALVMNFTAD 259

Query: 305 CWINIVDANGKAIVDGVRGAGANIQASGVLPFKVILGAPTVVSSFTVDGKAISLAEFPK- 363
           CW+ + DA GK +  G++    N+  +G  P+K+ +GAP  V      GK + L+ F + 
Sbjct: 260 CWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAV-QIQYQGKPVDLSRFIRT 318

Query: 364 GRVARLTI 371
            +VARLT+
Sbjct: 319 NQVARLTL 326