Pairwise Alignments

Query, 371 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 428 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  174 bits (440), Expect = 5e-48
 Identities = 118/347 (34%), Positives = 184/347 (53%), Gaps = 48/347 (13%)

Query: 20  VPIGDGAPIAVQSMTNTKTTDVEATVAQIRALEKVGADIVRVSVPTMDAAEAFKLIKQS- 78
           V +G  AP+ VQSMTNT T D   T  Q++ L   G+++VR++V   +AA+A   I++  
Sbjct: 38  VTVGGDAPVRVQSMTNTDTADAVGTAIQVKELALAGSELVRITVNNDEAAKAVPYIREQL 97

Query: 79  ----VSVPLVADIHFDYRIALKVAEYGVDCL---RINPGNIGN----EERIRSVVECARD 127
               ++VPL+ D H++    L       + L   RINPGN+G     + +   +VE A  
Sbjct: 98  DRMGINVPLIGDFHYNGHRLLTDHPACAEALSKYRINPGNVGRGDKGDRQFAQMVEIAAR 157

Query: 128 KNIPIRIGVNGGSLEKDLMDKYKEP-----TP--------EALLESAMRHVDILDR--LN 172
            +  IRIGVN GSL++DL+ +  +      TP        EAL+ SA+      +   LN
Sbjct: 158 YDKAIRIGVNWGSLDQDLLARLMDENANRSTPWEARQVMYEALITSALESARKAEEIGLN 217

Query: 173 FDQFKVSVKASDVFLAVESYRLLAKQIRQPLHLGITEAGGARAGAVKSAVGLGMLLAEGI 232
            +   +S K S V   +  Y+ LA++    LHLG+TEAG    GAV SA  L +LL +GI
Sbjct: 218 GNNIVLSCKVSGVQDLIAVYQALAQRCDYALHLGLTEAGMGTKGAVASAAALSVLLQQGI 277

Query: 233 GDTLRISLAADP----VEEIKVGFDILKSLRIRSRGINFIACPSCSRQEFDVISTVNELE 288
           GDT+R+SL   P     +E+ +  +IL++L +R+   +  ACP C R      +T  EL 
Sbjct: 278 GDTIRVSLTPQPGEARTQEVVIALEILQALGMRAFVPSVTACPGCGR---TTSTTFQELA 334

Query: 289 RRLEDVTTA--------------MDVSIIGCVVNGPGEALVSHIGLT 321
           ++++D                  + V+++GC+VNGPGE+  + IG++
Sbjct: 335 KQIDDYLRGSMPVWRARYPGVENLKVAVMGCIVNGPGESKHADIGIS 381