Pairwise Alignments

Query, 371 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 661 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  162 bits (411), Expect = 2e-44
 Identities = 102/289 (35%), Positives = 161/289 (55%), Gaps = 34/289 (11%)

Query: 5   TPIKRRPSTRIYVGNVPIGDGAPIAVQSMTNTKTTDVEATVAQIRALEKVGADIVRVSVP 64
           T   RR +  + +G+V IG   PI VQSMT   T D E ++ +   + K G +++R++ P
Sbjct: 17  TRYSRRKTIPVQIGDVVIGGDNPIVVQSMTTKDTMDTEGSIEECIRMIKSGCELIRITAP 76

Query: 65  TMDAAEAFKLIKQSVS-----VPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNE---- 115
           ++  AE  + IK  ++     VPLVADIHF    A ++A   V+ +RINPGN  ++    
Sbjct: 77  SIKEAENLRHIKAGLAERGYHVPLVADIHFTPNAA-EIAARIVEKVRINPGNYADKKKFE 135

Query: 116 -------------ERIRS----VVECARDKNIPIRIGVNGGSLEKDLMDKYKEPTPEALL 158
                        ERIR     +V+  ++    +RIG N GSL   +M +Y + TP  ++
Sbjct: 136 EIEYTDESYQAELERIRERFLPLVKICKEHGTAMRIGTNHGSLSDRIMSRYGD-TPLGMV 194

Query: 159 ESAMRHVDILDRLNFDQFKVSVKASDVFLAVESYRLLAKQIRQ------PLHLGITEAGG 212
           ESA+  + I +  ++    +S+K+S+  + V++YRLL +++ +      PLHLG+TEAG 
Sbjct: 195 ESALEFLRICEEEHYHDIVISMKSSNTQVMVQAYRLLVQKLDEGGFQPYPLHLGVTEAGD 254

Query: 213 ARAGAVKSAVGLGMLLAEGIGDTLRISLAADPVEEIKVGFDILKSLRIR 261
              G VKSAVG+G LL +G+GDT+R+SL  DP  E  V   ++    +R
Sbjct: 255 GEDGRVKSAVGIGTLLEDGLGDTVRVSLTEDPEFEAPVAKALIDRYALR 303



 Score = 72.8 bits (177), Expect = 3e-17
 Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 20/177 (11%)

Query: 194 LLAKQIRQPLHLGITEAGGARAGA----VKSAVGLGMLLAEGIGDTLRISLA--ADP--- 244
           L+  +IR P+   +TEAG     A    + +A  LG LL +G+GD + + L   A P   
Sbjct: 477 LINAEIRLPV---VTEAGYKEQDADQTMLYAATDLGGLLIDGLGDGVMLGLEEKAAPDRD 533

Query: 245 --VEEIK----VGFDILKSLRIRSRGINFIACPSCSRQEFDVISTVNELERRLEDVTTAM 298
             +E IK    V F +L++ R R     +I+CPSC R  FD+  T   + +R  D    +
Sbjct: 534 ALMETIKLHNSVSFGVLQAARTRMSKTEYISCPSCGRTLFDLQETTAMIRKR-TDHLKGV 592

Query: 299 DVSIIGCVVNGPGEALVSHIGLTG-GHRKSGYYDEGERQKERFDNDNLVDSLEAKIR 354
            + I+GC+VNGPGE   +  G  G G  K   Y   E  K    ++  VD L   IR
Sbjct: 593 KIGIMGCIVNGPGEMADADYGYVGSGKGKITLYKGKEVVKRAVPSEQAVDELINIIR 649