Pairwise Alignments

Query, 371 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 378 a.a., flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  395 bits (1014), Expect = e-114
 Identities = 198/354 (55%), Positives = 260/354 (73%)

Query: 7   IKRRPSTRIYVGNVPIGDGAPIAVQSMTNTKTTDVEATVAQIRALEKVGADIVRVSVPTM 66
           I+RR S +I VG+V +G  API+VQSMTNT TTD  AT+ QIR LE+ GADIVRVS P +
Sbjct: 13  IERRKSRQIRVGSVLVGGDAPISVQSMTNTPTTDAAATIDQIRQLEEAGADIVRVSCPDV 72

Query: 67  DAAEAFKLIKQSVSVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEERIRSVVECAR 126
           ++  AF+ I +   VPLVADIHF Y+  ++ AE G  CLRINPGNIG+ +R+R V++ A+
Sbjct: 73  ESTAAFRTIVREAKVPLVADIHFHYKRGIEAAEAGAACLRINPGNIGSADRVRDVIQAAK 132

Query: 127 DKNIPIRIGVNGGSLEKDLMDKYKEPTPEALLESAMRHVDILDRLNFDQFKVSVKASDVF 186
           D    +RIGVN GSLEK+L++KY EP P+A++ESA+ H  IL   +F +FK+SVKASD F
Sbjct: 133 DNGCSMRIGVNAGSLEKELLEKYGEPCPDAMVESALNHARILQDHDFHEFKISVKASDPF 192

Query: 187 LAVESYRLLAKQIRQPLHLGITEAGGARAGAVKSAVGLGMLLAEGIGDTLRISLAADPVE 246
           L V +Y+ LA+ I  PLHLG+TEAG  R G +KSA+GLG +L  GIGDT+R+SLAADPVE
Sbjct: 193 LTVAAYQQLAEAIDCPLHLGVTEAGPLRTGTIKSAIGLGSMLWAGIGDTIRVSLAADPVE 252

Query: 247 EIKVGFDILKSLRIRSRGINFIACPSCSRQEFDVISTVNELERRLEDVTTAMDVSIIGCV 306
           EIKVGFDILKSL +R RG+N IACPSC+RQ F+VI TV  LE +L  ++T M +S+IGCV
Sbjct: 253 EIKVGFDILKSLGLRHRGVNIIACPSCARQGFNVIETVAVLEEKLAHISTPMSLSVIGCV 312

Query: 307 VNGPGEALVSHIGLTGGHRKSGYYDEGERQKERFDNDNLVDSLEAKIRAKASQM 360
           VNGPGEAL + IG TGG + +G      +   +  ND ++D +   +  KA+++
Sbjct: 313 VNGPGEALYTDIGFTGGGKGAGMIYLNGKIAHKQANDGMIDHIVDLVEQKAAEL 366