Pairwise Alignments

Query, 371 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 416 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase from Agrobacterium fabrum C58

 Score =  186 bits (473), Expect = 8e-52
 Identities = 124/376 (32%), Positives = 203/376 (53%), Gaps = 46/376 (12%)

Query: 6   PIKRRPSTRIYVGNVPIGDGAPIAVQSMTNTKTTDVEATVAQIRALEKVGADIVRVSVPT 65
           P  RR S  + VG V +G GAP+ VQSMTNT T D++ATV Q+ AL + G+++VR++V  
Sbjct: 9   PKPRRASVAVDVGGVIVGGGAPVVVQSMTNTDTADIDATVRQVAALFQAGSEMVRITVDR 68

Query: 66  MDAAEAF-----KLIKQSVSVPLVADIHFDYRIALKVAEYGVDCL---RINPGNIG---- 113
            ++A A      +L++  + VPL+ D H+     L       + L   RINPGN+G    
Sbjct: 69  DESAAAVPKIRERLLRLGMDVPLIGDFHYIGHKLLADHPACAEALAKYRINPGNVGFKDK 128

Query: 114 NEERIRSVVECARDKNIPIRIGVNGGSLEKD----LMDKYKEP---------TPEALLES 160
            +++   +VE A   + P+RIGVN GSL+++    LMD+ KE          T EA+++S
Sbjct: 129 KDKQFGEIVEMAIRYDKPVRIGVNWGSLDQELLTTLMDRNKEQGFPLSARQVTREAIVQS 188

Query: 161 AMRHVDILDRLNFDQFKV--SVKASDVFLAVESYRLLAKQIRQPLHLGITEAGGARAGAV 218
           A+   ++ + +   + ++  S K S V   +  Y +L+++    LHLG+TEAG    G V
Sbjct: 189 ALISAELAEEIGLPRNRIILSAKVSQVQDLIAVYSMLSERSNHALHLGLTEAGMGSKGIV 248

Query: 219 KSAVGLGMLLAEGIGDTLRISLAADP----VEEIKVGFDILKSLRIRSRGINFIACPSCS 274
            S+  +G +L  GIGDT+R+SL  +P      E++V  ++L+ +  R       ACP C 
Sbjct: 249 ASSAAMGYVLQHGIGDTIRVSLTPEPNGDRTREVQVAQELLQVMGFRQFIPVVAACPGCG 308

Query: 275 RQEFDVISTV-----NELERRLE------DVTTAMDVSIIGCVVNGPGEALVSHIGL--- 320
           R    V   +     N++ + +           A++V+++GC+VNGPGE+  + IG+   
Sbjct: 309 RTTSTVFQELAQNIQNDIRKNMPIWREKYPGVEALNVAVMGCIVNGPGESKHADIGISLP 368

Query: 321 -TGGHRKSGYYDEGER 335
            TG    +  + +GE+
Sbjct: 369 GTGESPAAPVFIDGEK 384