Pairwise Alignments

Query, 379 a.a., cytochrome d ubiquinol oxidase, subunit II (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 335 a.a., cytochrome d ubiquinol oxidase subunit II from Pseudomonas fluorescens SBW25

 Score =  169 bits (428), Expect = 1e-46
 Identities = 108/364 (29%), Positives = 178/364 (48%), Gaps = 38/364 (10%)

Query: 7   LRVIWWALIGVLFIGFAVTDGFDMGVGALLPII-GKDDTERRIMINTIAPHWDGNQVWLI 65
           L +IW  +I    + + V DGFD+G+G L P I GK  T+R +M+NT+AP WDGN+ WL+
Sbjct: 5   LPLIWAVIIIFGIMMYVVMDGFDLGIGILFPFIPGK--TDRDVMMNTVAPVWDGNETWLV 62

Query: 66  TAGGALFAAWPMVYAVSFSGFYVAMMLVLFALYMRPVGFDYRSKIENPKWRKSWDWALFV 125
             G ALF A+P+ Y+V  S  Y+ ++L+L  L  R V F++R K ++ K R  WD A   
Sbjct: 63  LGGAALFGAFPLAYSVVLSALYLPLILMLIGLIFRGVAFEFRFKAKDHK-RHLWDKAFIG 121

Query: 126 GGFVPPLIIGVAFGNLLQGVPFNFDEFLRATYHGGLFGLLNPFGLLAGLVSVTMFMMQGA 185
           G        GVA G  + G+P      +   + GG      PF +  G+  +  + + G 
Sbjct: 122 GSLAATFFQGVALGAFIDGIP-----VVNRQFAGGSLDWATPFTMFCGVALIVAYALLGC 176

Query: 186 AWLQMKTEGELRVRAANATQLFALLVAVLFAAAGVWLANGIDGYVVTSALDHNAVSNPTL 245
            WL MKTEG L+ +  N  +  A +V  +     +W           + L H  +++   
Sbjct: 177 TWLIMKTEGPLQEKMHNLARPLAFVVLAVIGIVSIW-----------TPLTHPEIAS--- 222

Query: 246 KTVAVEAGAWLANYDKYPITMLFPVLGVALPLLVIVVSRLNRSGFAFLFSSLAVAMVILT 305
           +   +    W   +   PI +L  + G     L+  V+R N     FL + + + +    
Sbjct: 223 RWFTLPNLFW---FLPVPILVLVTMYG-----LIRAVAR-NAHYTPFLLTLVLIFLGYSG 273

Query: 306 CGAAMFPFVMPSSLDPNVSLTMWDATASEMTLTVMTWAAIVFVPIVLSYTVWTYFKMFGR 365
            G +++P ++P    P+VS+  WDA A   +   M    +  +P +L YT W+Y+   G+
Sbjct: 274 LGISLWPNIIP----PSVSI--WDAAAPPQSQGFMLVGTLFIIPFILGYTFWSYYVFRGK 327

Query: 366 LSRK 369
           ++ +
Sbjct: 328 VTHE 331