Pairwise Alignments

Query, 379 a.a., cytochrome d ubiquinol oxidase, subunit II (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 378 a.a., Cytochrome bd-II ubiquinol oxidase subunit 2 from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  426 bits (1096), Expect = e-124
 Identities = 202/379 (53%), Positives = 271/379 (71%), Gaps = 1/379 (0%)

Query: 1   MFDYEMLRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMINTIAPHWDGN 60
           MFDYE LR IWW LIGV+ + F ++DGFDMG+G LLP++ ++D ERRI+IN++  HW+GN
Sbjct: 1   MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60

Query: 61  QVWLITAGGALFAAWPMVYAVSFSGFYVAMMLVLFALYMRPVGFDYRSKIENPKWRKSWD 120
           QVWLI AGGALFAAWP VYA +FSGFYVAM+LVL +L+ RP+ FDYR KI + +WRK WD
Sbjct: 61  QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120

Query: 121 WALFVGGFVPPLIIGVAFGNLLQGVPFNFDEFLRATYHGGLFGLLNPFGLLAGLVSVTMF 180
             L +G  VPP++ G+AFGNLL GVPF F   LR  Y G  + LL PF LL GL+S+ M 
Sbjct: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180

Query: 181 MMQGAAWLQMKTEGELRVRAANATQLFALLVAVLFAAAGVWLANGIDGYVVTSALDHNAV 240
           ++QG  WLQ+KT G + +R+  AT+  ALLV + F  AG WL  GIDG+V+  A D N  
Sbjct: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLL-AQDANGP 239

Query: 241 SNPTLKTVAVEAGAWLANYDKYPITMLFPVLGVALPLLVIVVSRLNRSGFAFLFSSLAVA 300
           SNP +K VAV  GAW+ N+ + P+  +FP+LG   PLL ++     R G+ FL +SL   
Sbjct: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299

Query: 301 MVILTCGAAMFPFVMPSSLDPNVSLTMWDATASEMTLTVMTWAAIVFVPIVLSYTVWTYF 360
            VI T G  +FPFVMPSS+ P  SLT+WD+T+S++TL++M    ++F+PIVL YT+W+Y+
Sbjct: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359

Query: 361 KMFGRLSRKHIEDNKASLY 379
           KM+GR++ + +  N+  LY
Sbjct: 360 KMWGRMTTETLRRNENELY 378