Pairwise Alignments

Query, 379 a.a., cytochrome d ubiquinol oxidase, subunit II (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 358 a.a., cytochrome d ubiquinol oxidase subunit II from Cellulophaga baltica 18

 Score =  174 bits (441), Expect = 3e-48
 Identities = 112/378 (29%), Positives = 178/378 (47%), Gaps = 46/378 (12%)

Query: 7   LRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMINTIAPHWDGNQVWLIT 66
           + + W+ ++  +   + + DG+D G G +     K + +++ + N I P WD N+VWLI 
Sbjct: 1   MELFWYIVLMTMLAVYVILDGYDFGAGIIHLFFAKTEKDKKAITNAIGPFWDANEVWLIA 60

Query: 67  AGGALFAAWPMVYAVSFSGFYVAMMLVLFALYMRPVGFDYRSKIENPKWRKSWDWALFVG 126
           +GG LF A+P +YA SFSGFY+ ++++L+ L  R +G + R ++ N  W   WD A  + 
Sbjct: 61  SGGVLFFAFPTLYASSFSGFYLPLIMILWLLIFRAIGLELRGQVHNAMWEAIWDKAFGIA 120

Query: 127 GFVPPLIIGVAFGNLLQGVPFNFDEFLRATYHGGLF----------------GLLNPFGL 170
             +  L  GVA GN+++GV         +T     F                G+L+ F L
Sbjct: 121 SLLLALFFGVALGNIVRGVNLGIVTEGVSTQEAHYFFLPLWNPTFSPQAEHLGILDWFTL 180

Query: 171 LAGLVSVTMFMMQGAAWLQMKTEGELRVRAANAT-QLFALLVAVLFAAAGVWLANGIDGY 229
           L G++ V    + GA W+  KT  +L  +      +L  +L+A++  +  VW        
Sbjct: 181 LLGVIGVVSLSIHGANWIIFKTNSDLNEKLKTVIFRLNFVLLALVIISLSVW-------- 232

Query: 230 VVTSALDHNAVSNPTLKTVAVEAGAWLANYDKYPITMLFPVLGVALPLLVIVVSRLNRSG 289
                  H     P              N+ K P   +FP+L       +  V R  R G
Sbjct: 233 -------HVIEPKP------------FQNFLKTPWLWIFPLLTFIGLFGLFKVKRFKRDG 273

Query: 290 FAFLFSSLAVAMVILTCGAAMFPFVMPSSLDPNVSLTMWDATASEMTLTV-MTWAAIVFV 348
             FLFSSL +   + T  A++FP V+PS+ D N SLT+++  A E  L V + W AI  V
Sbjct: 274 LGFLFSSLFLFGGLTTTVASIFPKVLPSTNDINPSLTIYNVAADEYGLWVGVYWFAIAIV 333

Query: 349 PIVLSYTVWTYFKMFGRL 366
            +V  Y V  Y    G++
Sbjct: 334 -LVAIYMVIQYRVFKGKM 350