Pairwise Alignments

Query, 379 a.a., cytochrome d ubiquinol oxidase, subunit II (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 333 a.a., cytochrome d ubiquinol oxidase subunit II from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  174 bits (442), Expect = 2e-48
 Identities = 120/367 (32%), Positives = 171/367 (46%), Gaps = 51/367 (13%)

Query: 7   LRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMINTIAPHWDGNQVWLIT 66
           L ++W  L+      + V DGFD+GVG L P +   D   + M N+IAP WDGN+ WLI 
Sbjct: 5   LTLVWAGLLAFAVFAYIVMDGFDLGVGILFPTLKAGDQRDKAM-NSIAPVWDGNETWLIL 63

Query: 67  AGGALFAAWPMVYAVSFSGFYVAMMLVLFALYMRPVGFDYRSKIENPKWRKSWDWALFVG 126
            GG LFAA+P+ YAV     Y  ++ +L  L  R V F+YR +    K    WD A F G
Sbjct: 64  GGGGLFAAFPLAYAVLMPAVYTPIIAMLLGLVFRGVAFEYRWRTVRAK--PIWDVAFFGG 121

Query: 127 GFVPPLIIGVAFGNLLQGVPFNFDEFLRATYHGGLFGLLNPFGLLAGLVSVTMFMMQGAA 186
             +     GV  G +LQGV     E     Y GG +  L+PF LL G   V  + + GA 
Sbjct: 122 SLLAAFSQGVTLGAILQGV-----EVSGRAYGGGSWDWLSPFSLLTGAAVVVGYALLGAT 176

Query: 187 WLQMKTEGELRVRAANATQLFALLVAVLFAAAGVWLANGIDGYVVTSALDHNAVSNPTLK 246
           WL MKTEG L+  A   +Q + L  A L     V LA        T  LD          
Sbjct: 177 WLNMKTEGALQTHA--RSQAWKLGPATLLMIGAVSLA--------TPFLD---------- 216

Query: 247 TVAVEAGAWLANYDKYPITMLFPVLGVALPLLVIVVS-------RLNRSGFAFLFSSLAV 299
                 G +   +  +P  +    L   +PLLV++V+       R  R  + FL S    
Sbjct: 217 ------GEYARRWFDWPGVL----LTAQVPLLVLIVAAAFFWTMRQKREVWPFLLSLGLF 266

Query: 300 AMVILTCGAAMFPFVMPSSLDPNVSLTMWDATASEMTLTVMTWAAIVFVPIVLSYTVWTY 359
           A+     G ++FP+ +P        +T+W A A   +   M   A++ +PI+L+YT + Y
Sbjct: 267 AVTFAGLGVSVFPYAVPD------EITLWQAAAPASSQLFMLVGALILIPIILAYTAYAY 320

Query: 360 FKMFGRL 366
           +   G++
Sbjct: 321 WVFRGKV 327