Pairwise Alignments

Query, 272 a.a., flagellin (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 395 a.a., Flagellin protein FlaA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  191 bits (486), Expect = 2e-53
 Identities = 103/168 (61%), Positives = 129/168 (76%), Gaps = 2/168 (1%)

Query: 4   TVNTNVTSLKAQKNLNTSASDLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRGLEV 63
           T+NTNV S+ AQ+NL++SAS LATSM+RLSSGLR+NSAKDDAAGLAIS R+N+QVRGL V
Sbjct: 3   TINTNVMSMNAQRNLSSSASSLATSMQRLSSGLRVNSAKDDAAGLAISERMNTQVRGLNV 62

Query: 64  GMRNANDAISIAQIAEGAMQEQTNMLQRMRDLTVQSENGANSSADLSALKAEMDQLANEI 123
             RNAND IS+AQ AEGA+ +  +MLQRMR+L VQS N +N+ +D +AL AE+ QL  EI
Sbjct: 63  AARNANDGISLAQTAEGALGKVGDMLQRMRELAVQSANASNNGSDRTALNAEVQQLRQEI 122

Query: 124 DEIGKTTAFGTTKLLAGGFSAGKNFQVGAQDGEDIKV-TVKASNKSSL 170
           D + KTT+F  TKLL G F A   FQVGA  GE I + ++  SN ++L
Sbjct: 123 DRVAKTTSFNGTKLLDGSF-ANATFQVGANAGEGISIDSIVNSNSAAL 169



 Score = 97.8 bits (242), Expect = 3e-25
 Identities = 59/151 (39%), Positives = 87/151 (57%), Gaps = 19/151 (12%)

Query: 141 GFSAGKNFQVGAQDGEDI--KVTVKASNKSSLSVGSLGNTTSAARAS------------- 185
           G  A   +  G  DG ++  +  V A++  + + G+ G   + A A              
Sbjct: 243 GVFARPTYTAGVMDGYEVFAERAVVAADFGNFAAGTTGAGVNTAAAVDSFVEDINVNSFG 302

Query: 186 ----SLKKIDAAIKTIDAQRADLGAIQNRLAHNISNSANTQANVADAKSRIVDVDFAKET 241
               +LK ID AI  I++ RADLGA+Q+R  + ++N   T  N++ A+ RIVD DFAKET
Sbjct: 303 DSQLALKVIDNAINAINSSRADLGALQSRFENAVANIQITGENISAARGRIVDADFAKET 362

Query: 242 SQMTKNQVLQQTGSAMLAQANQLPQVALSLL 272
           S +++ Q+LQQ G+AM+AQANQ+PQ  LSLL
Sbjct: 363 SNLSRAQILQQAGTAMVAQANQIPQGVLSLL 393