Pairwise Alignments

Query, 272 a.a., flagellin (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 498 a.a., flagellin (NCBI) from Escherichia coli BW25113

 Score =  150 bits (380), Expect = 4e-41
 Identities = 82/172 (47%), Positives = 111/172 (64%), Gaps = 2/172 (1%)

Query: 1   MAITVNTNVTSLKAQKNLNTSASDLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60
           MA  +NTN  SL  Q N+N + S L++S+ERLSSGLRINSAKDDAAG AI+NR  S ++G
Sbjct: 1   MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKG 60

Query: 61  LEVGMRNANDAISIAQIAEGAMQEQTNMLQRMRDLTVQSENGANSSADLSALKAEMDQLA 120
           L    RNAND IS+AQ  EGA+ E  N LQR+R+LTVQ+  G NS +DLS+++ E+    
Sbjct: 61  LTQAARNANDGISVAQTTEGALSEINNNLQRVRELTVQATTGTNSESDLSSIQDEIKSRL 120

Query: 121 NEIDEIGKTTAFGTTKLLAGGFSAGKNFQVGAQDGEDIKVTVKASNKSSLSV 172
           +EID +   T F    +LA   +     QVGA D + I + +K  +  +L +
Sbjct: 121 DEIDRVSGQTQFNGVNVLAK--NGSMKIQVGANDNQTITIDLKQIDAKTLGL 170



 Score = 96.7 bits (239), Expect = 9e-25
 Identities = 80/273 (29%), Positives = 132/273 (48%), Gaps = 35/273 (12%)

Query: 3   ITVNTNVTSLKAQKNLNTSASDLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRGLE 62
           +T+ T  T+     + NT+ +   TS      G  +    D+ AG A +N     +  L+
Sbjct: 256 VTMATGATANATVTDANTTKATTITS-----GGTPVQI--DNTAGSATANLGAVSLVKLQ 308

Query: 63  VGMRNANDAISIAQI---AEGAMQEQTNMLQRMRDLTVQSENGANSSADLSALKAEMDQL 119
               N  D  ++         A   +T     ++ +T    +GA SS   +A+K   D  
Sbjct: 309 DSKGNDTDTYALKDTNGNLYAADVNETTGAVSVKTITYTDSSGAASSP--TAVKLGGDDG 366

Query: 120 ANEIDEIGKTTAFGTTKLLAGGFSAGKNFQVGAQDGEDIKVTVKASNKSSLSVGSLGNTT 179
             E+ +I                  GK +     +G +++  + A  ++  +V + G TT
Sbjct: 367 KTEVVDID-----------------GKTYDSADLNGGNLQTGLTAGGEALTAVAN-GKTT 408

Query: 180 SAARASSLKKIDAAIKTIDAQRADLGAIQNRLAHNISNSANTQANVADAKSRIVDVDFAK 239
                  LK +D AI ++D  R+ LGA+QNRL   ++N  NT  N+++A+SRI D D+A 
Sbjct: 409 DP-----LKALDDAIASVDKFRSSLGAVQNRLDSAVTNLNNTTTNLSEAQSRIQDADYAT 463

Query: 240 ETSQMTKNQVLQQTGSAMLAQANQLPQVALSLL 272
           E S M+K Q++QQ G+++LA+ANQ+PQ  LSLL
Sbjct: 464 EVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLL 496