Pairwise Alignments

Query, 553 a.a., flagellar M-ring protein FliF (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 566 a.a., flagellar M-ring protein from Agrobacterium fabrum C58

 Score =  147 bits (370), Expect = 1e-39
 Identities = 118/430 (27%), Positives = 213/430 (49%), Gaps = 32/430 (7%)

Query: 13  VLGNLGGVDMMRQITM----ILALAICLALAVFVMIWAQEPEYRPLGKMETQEMVQVLDV 68
           VL N+  +   R + +    +L++AI LA A++V   A E  Y  L   E  ++ ++   
Sbjct: 16  VLKNVAALGQTRLLMLGGVGVLSMAIILAAALYVNRPAYETLYVGL---EKSDLNKISIA 72

Query: 69  LDKNKIKYQIDVD--VVKVPEDKYQEVKMMLSRAGIDSAATSKQDFLTQDSGFGVSQRME 126
           L ++ + +Q+  D   ++VP     + +++L+  G+  +A +  +        G++  M+
Sbjct: 73  LAESGLDFQVGTDGSSLQVPVGLTSKARLLLAERGLPDSANAGYELFDNVGSLGLTSFMQ 132

Query: 127 QARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTAQPSATVVINTRRGGLGQG 186
           +     + E  + R+I+Q+  VS A+V + LP    F R   +P+A+V+I       G+ 
Sbjct: 133 EVTRVRALEGEIGRSIQQIDGVSAARVHIVLPDVGNFRRGEQKPTASVMIRA-SASAGRK 191

Query: 187 EVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKETEYRTK 246
              +I  +VASAV GLE   VT+ DS G+LL SG  D  +A   R L L Q  + E  T 
Sbjct: 192 ASASIRHLVASAVPGLEVDDVTLLDSTGQLLASG-DDVTNAAMNRSLTLAQNVQQEITTN 250

Query: 247 IDSILSPILGHDNFTSQV--DVSMDFTAVEQTAKRFNPDLPSLRSEMTVENNSTGGSTGG 304
           ID  L+P LG DNF S V   ++ D   V++T   ++P+    RS  TV+ +     T  
Sbjct: 251 IDKALAPFLGIDNFRSSVTAQINTDSRQVQETV--YDPESRVERSVRTVKEDQKSQET-- 306

Query: 305 IPGALSNQPPMESNIPQEAATAATESVAAG------NSHREATRNFELDTTISHTRQQIG 358
                  QP   + + Q    AA +    G      ++ +E   N+E+++    T +   
Sbjct: 307 -------QPDTAATVEQNVPQAAPQGGGGGPQSSDQSAKKEEQTNYEINSKTVATVKNGY 359

Query: 359 VVRRVSVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDVLEVVTV 418
            + ++SV+V V+ K   A   G+ A  A+ +  L  +++++  A G S+ RGD++ +  +
Sbjct: 360 TLEKISVAVVVN-KGRIAKMVGEPADQAKIDAYLAEMQKIVTSAAGISSDRGDIVTLTAM 418

Query: 419 PFMD-QLVED 427
            F++ QL+++
Sbjct: 419 DFLETQLLDE 428