Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 322 a.a., flagellar motor switch protein FliM from Pseudomonas simiae WCS417

 Score =  416 bits (1068), Expect = e-121
 Identities = 196/320 (61%), Positives = 260/320 (81%), Gaps = 1/320 (0%)

Query: 1   MSDLLSQDEIDALLHGVDDVEEDNELDAVGQEARSYDFSSQDRIVRGRMPTLEIVNERFA 60
           + DLLSQDEIDALLHGVDD     E+ A     +SYD +SQDRIVRGRMPTLE++NERFA
Sbjct: 3   VQDLLSQDEIDALLHGVDDGLVQTEMAAEPGSVKSYDLTSQDRIVRGRMPTLEMINERFA 62

Query: 61  RHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARL 120
           R+ RISMFNM+RR+A+V++ GVQ++KFGEYVH+L+VPTSLN+V+  PL+GTAL  ++A+L
Sbjct: 63  RYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKL 122

Query: 121 VFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLDS 180
           VF LVDNFFGGDGR HAKIEGREFTPTE R+V+++L+  F D K+AW  +M+V F+Y++S
Sbjct: 123 VFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFIDLKEAWQAIMEVNFEYINS 181

Query: 181 EVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTD 240
           EVNPAMANIV P+E +V+++FHIE+DGGGGD H+TMPYSMIEP+RE+LDAG QSD  D D
Sbjct: 182 EVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQD 241

Query: 241 MRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIMMRIEDLPTYR 300
            RW +AL ++++DV V   ATV   +L L+D+++ + GDIIP+ELPE ++MR   +P+++
Sbjct: 242 ERWVKALREDLLDVDVPLSATVARRQLRLRDILHMQPGDIIPVELPEEMIMRANGVPSFK 301

Query: 301 CKMGRSRDNLALKIYEKIPR 320
            K+G  + NLAL++ E I R
Sbjct: 302 VKLGSHKGNLALQVVEPINR 321