Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 322 a.a., flagellar synthesis, switching and energizing component from Pseudomonas putida KT2440

 Score =  408 bits (1048), Expect = e-118
 Identities = 191/320 (59%), Positives = 257/320 (80%), Gaps = 1/320 (0%)

Query: 1   MSDLLSQDEIDALLHGVDDVEEDNELDAVGQEARSYDFSSQDRIVRGRMPTLEIVNERFA 60
           + DLLSQDEIDALLHGVDD     E  +     +SYD +SQDRIVRGRMPTLE++NERFA
Sbjct: 3   VQDLLSQDEIDALLHGVDDGLVQTESASEPGSIKSYDLTSQDRIVRGRMPTLEMINERFA 62

Query: 61  RHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARL 120
           R+ RISMFN++RR+A+V++ GVQ++KFGEYVH+L+VPTSLN+V+  PL+GT+L  ++A+L
Sbjct: 63  RYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAKL 122

Query: 121 VFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLDS 180
           VF LVDNFFGGDGR HAKIEGREFTPTE R+V+++L   F D K+AW  +M V F+Y++S
Sbjct: 123 VFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMPVSFEYMNS 181

Query: 181 EVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTD 240
           EVNPAMANIV P+E VV+++FHIE+DGGGGD H+TMPYSMIEP+RE+LDAG QSD  D D
Sbjct: 182 EVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQD 241

Query: 241 MRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIMMRIEDLPTYR 300
            RW +AL ++++DV V   ATV   +L L+D+++ + GD+IP+ELPE++++R   +P ++
Sbjct: 242 ERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEHLVLRANGVPAFK 301

Query: 301 CKMGRSRDNLALKIYEKIPR 320
            ++G  + NLAL+I + I R
Sbjct: 302 ARLGSHKGNLALQIIDPIER 321