Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 334 a.a., Flagellar motor switch protein FliM from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  262 bits (669), Expect = 1e-74
 Identities = 126/311 (40%), Positives = 198/311 (63%), Gaps = 1/311 (0%)

Query: 5   LSQDEIDALLHGVDDVEEDNELDAVGQEA-RSYDFSSQDRIVRGRMPTLEIVNERFARHL 63
           LSQ+EIDALL GV    +    + V     R Y  SSQ+RIVRGRMPT+EIVNERF+R+L
Sbjct: 6   LSQEEIDALLEGVTGESQKLAKEEVPTGGVRDYSLSSQERIVRGRMPTMEIVNERFSRNL 65

Query: 64  RISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFI 123
           R+ +FN +RR+ E+S+  VQ+ K+  ++  L VPT+ N++   PL+G  L+  E  L+F 
Sbjct: 66  RLGLFNFIRRSPEISVGAVQVQKYSAFLRELVVPTNFNIMAIRPLRGNGLVVCEPTLLFG 125

Query: 124 LVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLDSEVN 183
           ++D+ FGG+G+FH +IEGR+F+PTE+R++  L++++ E+YK AW  V  +E  Y  SE+ 
Sbjct: 126 VIDSLFGGNGKFHTRIEGRDFSPTEQRVINRLVEVVSEEYKKAWRGVYPIELAYQRSEMQ 185

Query: 184 PAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRW 243
           P  A I +P+E+VV  SF +E+    G  HI +PY+ +EPIR++L + VQ D  + D RW
Sbjct: 186 PQFATIATPSEIVVSTSFTLEIGDITGSLHICIPYATLEPIRDVLYSSVQGDAIEVDRRW 245

Query: 244 SQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIMMRIEDLPTYRCKM 303
            + L  EI   +V   A + + E T++ ++  + GD I ++    I   ++ +P + C+ 
Sbjct: 246 VKLLSHEIQAAEVTMVAELAQTEATVEQLLAMQIGDFIELDRHPSIKAHVDGVPVFECQY 305

Query: 304 GRSRDNLALKI 314
           G  +   AL++
Sbjct: 306 GTHKGKYALRV 316