Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 333 a.a., flagellar motor switch protein FliM from Serratia liquefaciens MT49

 Score =  241 bits (616), Expect = 1e-68
 Identities = 114/312 (36%), Positives = 193/312 (61%), Gaps = 1/312 (0%)

Query: 4   LLSQDEIDALLHGVDDVEEDNELDAVGQEARSYDFSSQDRIVRGRMPTLEIVNERFARHL 63
           +LSQ EIDALL+G    +E   +     E + YD ++Q R+VR R+  LEI+NERFAR  
Sbjct: 5   ILSQAEIDALLNGDSAGDEPEAVALNESEVKPYDPTTQRRVVRERLHALEIINERFARQF 64

Query: 64  RISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFI 123
           R+ +FN++RR+ ++++  +++  + E+   L VPT+LN+V  +PL+GTAL      LVFI
Sbjct: 65  RMGLFNLLRRSPDITVGPIKIQPYHEFARNLPVPTNLNLVHLNPLRGTALFVFAPSLVFI 124

Query: 124 LVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLDSEVN 183
            VDN FGGDGRF  K+EGREFTPTE+R+++ +L++  + Y DAW+ +  ++ +Y+ +E+ 
Sbjct: 125 AVDNLFGGDGRFPTKVEGREFTPTEQRVIKRMLRLALDAYGDAWSAIYKIDVEYVRAEMQ 184

Query: 184 PAMANI-VSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMR 242
               NI  SP ++VV   F +E+    G+F+I +P++MIEP+RELL      + +  D  
Sbjct: 185 VKFTNITTSPNDIVVTTPFQVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSH 244

Query: 243 WSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIMMRIEDLPTYRCK 302
           W + L  ++   ++   A  V+  + L  ++  + GD++PI+ P+ ++  ++ +P    +
Sbjct: 245 WRETLVKQVQHSELELIANFVDIPMRLSKILKLQPGDVLPIDKPDRLIAHVDGVPVLTSQ 304

Query: 303 MGRSRDNLALKI 314
            G      AL++
Sbjct: 305 YGTLNGQYALRV 316