Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 334 a.a., Flagellar motor switch protein FliM from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  244 bits (624), Expect = 2e-69
 Identities = 121/313 (38%), Positives = 190/313 (60%), Gaps = 2/313 (0%)

Query: 4   LLSQDEIDALLHGVDDVEEDNELD-AVGQEARSYDFSSQDRIVRGRMPTLEIVNERFARH 62
           +LSQ EIDALL+G  D +++     A   + R YD ++Q R+VR R+  LEI+NERFAR 
Sbjct: 5   ILSQAEIDALLNGDSDTKDEPTPGIASDSDIRPYDPNTQRRVVRERLQALEIINERFARQ 64

Query: 63  LRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVF 122
            R+ +FN++RR+ ++++  +++  + E+   L VPT+LN++   PL+GT L+     LVF
Sbjct: 65  FRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVF 124

Query: 123 ILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLDSEV 182
           I VDN FGGDGRF  K+EGREFT TE+R++  +LK+  E Y DAW  +  +E +Y+ SE+
Sbjct: 125 IAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEM 184

Query: 183 NPAMANI-VSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDM 241
                NI  SP ++VV   FH+E+    G+F+I +P+SMIEP+RELL      + +  D 
Sbjct: 185 QVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQ 244

Query: 242 RWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIMMRIEDLPTYRC 301
            W   L  ++   ++   A   +  L L  ++  K GD++PIE P+ I+  ++ +P    
Sbjct: 245 NWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKPDRIIAHVDGVPVLTS 304

Query: 302 KMGRSRDNLALKI 314
           + G      AL++
Sbjct: 305 QYGTVNGQYALRV 317