Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 338 a.a., flagellar motor switch protein FliM from Dickeya dianthicola ME23

 Score =  248 bits (633), Expect = 2e-70
 Identities = 123/315 (39%), Positives = 192/315 (60%), Gaps = 4/315 (1%)

Query: 4   LLSQDEIDALLHGVDDVEEDNELDAVGQ---EARSYDFSSQDRIVRGRMPTLEIVNERFA 60
           +LSQ EIDALL+G       +  +A  Q   + + YD ++Q R++R R+  LEI+NERFA
Sbjct: 5   ILSQAEIDALLNGDSGDSSADASNAASQKDGDVKPYDPNTQRRVIRERLQALEIINERFA 64

Query: 61  RHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARL 120
           R  R+ +FN++RR+ ++++  +++  + E+   L VPT+LN++   PL+GTAL      L
Sbjct: 65  RQFRMGLFNLLRRSPDITVGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSL 124

Query: 121 VFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLDS 180
           VFI VDN FGGDGRF  K+EGREFT TE+R+V+ +LK+  E Y DAW  +  ++ +Y+ S
Sbjct: 125 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVVRRMLKLALESYSDAWNAIYKLDVEYVRS 184

Query: 181 EVNPAMANI-VSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDT 239
           E+     NI  SP ++VV   FH+E+    G+F I +P+SMIEP+RELL      + Q  
Sbjct: 185 EMQVKFTNITTSPNDIVVTTPFHLEIGTLTGEFSICIPFSMIEPLRELLANPPLENSQQE 244

Query: 240 DMRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIMMRIEDLPTY 299
           D  W + L  ++   ++   A  V+  + L  V+  K GDI+PI+ PE ++  ++ +P  
Sbjct: 245 DQHWRETLAKQVQHSELELVANFVDIPVRLSKVLKLKPGDILPIDKPERLVAHVDGVPVL 304

Query: 300 RCKMGRSRDNLALKI 314
            C+ G      AL++
Sbjct: 305 TCQYGTLDGQYALRV 319