Pairwise Alignments

Query, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 357 a.a., Flagellar motor switch protein FliM from Azospirillum sp. SherDot2

 Score =  153 bits (387), Expect = 6e-42
 Identities = 92/329 (27%), Positives = 169/329 (51%), Gaps = 17/329 (5%)

Query: 4   LLSQDEIDALLH----GVDDVEEDNELDAVGQEARSYDFSSQDRIVRGRMPTLEIVNERF 59
           +L+QDEID+LL     G  D +    +  V     +Y+          R+P LE+V +R 
Sbjct: 38  VLNQDEIDSLLGFDQGGAGDGDNSGIMALVNSALVNYE----------RLPMLEVVFDRL 87

Query: 60  ARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEAR 119
            R +  S+ N      EVS++ +  ++FG+Y++++ +P  L++ +        L+ +++ 
Sbjct: 88  VRMMSTSLRNFTSDNVEVSLDQISSVRFGDYLNSIPLPAMLSVFKAEEWDNYGLMVVDSA 147

Query: 120 LVFILVDNFFGGD-GRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYL 178
           L++ +VD   GG  G    +IEGR +T  ER +V+ ++ ++  D   A+ P+  V F + 
Sbjct: 148 LIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSAAFDPLSPVTFRFD 207

Query: 179 DSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQD 238
             E NP  A I  P    V+    I+++  GG   + +PY+ +EP+RELL      +K  
Sbjct: 208 RLETNPRFATIARPANAAVLVKLRIDMEDRGGRLELMIPYATLEPVRELLLQMFMGEKFG 267

Query: 239 TDMRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPE--YIMMRIEDL 296
            D  W   L  E+M   V   A + E  +TL DV+N++ G  I +       I +R  D+
Sbjct: 268 RDSIWETHLASELMVTDVDLSAVLDEVTMTLHDVLNWRVGTRILLNATPDGAIELRCGDV 327

Query: 297 PTYRCKMGRSRDNLALKIYEKIPRPETVK 325
             ++ +MGR   ++A+++ +++P+ E ++
Sbjct: 328 SMFQGRMGRKGGHIAVRLEKELPKQEVMR 356