Pairwise Alignments

Query, 124 a.a., flagellar motor switch protein FliN (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 158 a.a., Flagellar motor switch protein FliN from Pseudomonas sp. S08-1

 Score =  145 bits (367), Expect = 2e-40
 Identities = 85/144 (59%), Positives = 101/144 (70%), Gaps = 26/144 (18%)

Query: 5   DDWAAAMAEQALEEANAVGLDELVDDSQ------------------------PISKAEAA 40
           D+WAAA+AE A ++A    +D L++                           P+S  +  
Sbjct: 17  DEWAAALAE-AGDDAGQADIDALMNQGAGAAAPAAPRMAMEEFGAAPKPGNGPVS-LDGP 74

Query: 41  KLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVV 100
            LD ILDIPV+ISMEVG + ISIRNLLQLNQGSVVELDR+AGEPLDV+VNGTLIAHGEVV
Sbjct: 75  NLDVILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEVV 134

Query: 101 VVNDKFGIRLTDVISQTERIKKLK 124
           VVN+KFGIRLTDVIS +ERIKKL+
Sbjct: 135 VVNEKFGIRLTDVISPSERIKKLR 158