Pairwise Alignments

Query, 237 a.a., RNA polymerase sigma-27 factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 241 a.a., RNA polymerase sigma factor for flagellar operon from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  132 bits (332), Expect = 6e-36
 Identities = 75/215 (34%), Positives = 124/215 (57%), Gaps = 7/215 (3%)

Query: 20  YAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFAGIRIRGAM 79
           + PLV+R    L +++  ++  DD++Q G+MGLLEA  ++ G    +F  FAG+R+RGA+
Sbjct: 32  FTPLVRRTVRQLSSQVGGAMDRDDMMQIGLMGLLEALRRY-GEPDERFPAFAGLRVRGAI 90

Query: 80  LDEIRRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEIAEKLDMTLDEYHHILNDVS 139
           LDE+RR DW PRSV + + R+   +  L + LGR+  + E+  +LD++ + Y     D +
Sbjct: 91  LDELRRQDWRPRSVRQESFRLKAEVRALTKRLGREPTEAEVLAELDISPEAYLAYQQDSN 150

Query: 140 VGKIIGIEDLGVSEDILTTSDNVSDGTFEVLAETQFHSALVEAIKILPERDALVLSLYYD 199
                  E L   +D+  T  N +       AE     +L +A+  L ER+  V+ LYY+
Sbjct: 151 A------ETLASFDDLFDTLSNEASSQRSPEAELVLKRSLQQALGTLSEREQRVIQLYYE 204

Query: 200 EALNLKEIGAILEVSESRVSQILSQAMLRLKGKLK 234
             L+LKEI A+L ++E+R+ QI   A+ ++K  L+
Sbjct: 205 YELSLKEIAAVLGLTEARICQINKAALQKMKTVLQ 239