Pairwise Alignments

Query, 237 a.a., RNA polymerase sigma-27 factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 240 a.a., RNA polymerase sigma factor FliA from Pectobacterium carotovorum WPP14

 Score =  194 bits (493), Expect = 1e-54
 Identities = 110/226 (48%), Positives = 148/226 (65%), Gaps = 5/226 (2%)

Query: 12  NKTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFA 71
           +K S+ ++Y PLV+  A  L  RLPASV+LDDLLQAG +GLL A  ++D  +G  F T+A
Sbjct: 12  DKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLSAVERYDSLQGTAFTTYA 71

Query: 72  GIRIRGAMLDEIRRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEIAEKLDMTLDEY 131
             RIRG+MLDE+R  DW PRSV RN R +AQA+ + EQ LGR   + E+A+ L++TL++Y
Sbjct: 72  VQRIRGSMLDELRSRDWAPRSVRRNAREVAQAMQQAEQQLGRTPTEQEVAQTLNITLEDY 131

Query: 132 HHILNDVSVGKIIGI----EDLGVSEDILTTSDNVSDGTFEVLAETQFHSALVEAIKILP 187
             IL D +  ++       E+ G S + L    N        L E      +++AI+ LP
Sbjct: 132 RQILLDTNNSQLFSYDEWREEHGDSAEAL-LEGNEDANPLHQLMEGNLRHRVMDAIESLP 190

Query: 188 ERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKL 233
           ER+ LVL+LYY E LNLKEIGA+LEV ESRVSQ+ SQA+ RL+ KL
Sbjct: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRVKL 236