Pairwise Alignments

Query, 237 a.a., RNA polymerase sigma-27 factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 240 a.a., RNA polymerase sigma factor FliA from Serratia liquefaciens MT49

 Score =  194 bits (493), Expect = 1e-54
 Identities = 109/226 (48%), Positives = 150/226 (66%), Gaps = 5/226 (2%)

Query: 12  NKTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFA 71
           +K S+  +Y PLV+  A  L  RLPASV+LDDLLQAG +GLL A  ++D  +G  F T+A
Sbjct: 12  DKNSLWLRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71

Query: 72  GIRIRGAMLDEIRRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEIAEKLDMTLDEY 131
             RIRGAMLDE+R  DWVPRSV R+ R +AQ + +LEQ LGR A + E+A+ L++ LDEY
Sbjct: 72  VQRIRGAMLDELRSRDWVPRSVRRHAREVAQVMRQLEQRLGRPASEVEVAQTLNLPLDEY 131

Query: 132 HHILNDVSVGKIIGI----EDLGVSEDILTTSDNVSDGTFEVLAETQFHSALVEAIKILP 187
             IL D +  ++       E+ G S + L      ++    +L E      +++AI+ LP
Sbjct: 132 RQILLDTNNSQLFSYDEWREEHGESAEPLLEGHEEANPLHHLL-EGNLRQRVIDAIEALP 190

Query: 188 ERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKL 233
           ER+ +VL+LYY E LNLKEIGA+L+V ESRVSQ+ SQA+ RL+ +L
Sbjct: 191 EREKMVLTLYYQEELNLKEIGAVLDVGESRVSQLHSQAIKRLRSRL 236