Pairwise Alignments

Query, 237 a.a., RNA polymerase sigma-27 factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 239 a.a., flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) from Escherichia coli BW25113

 Score =  207 bits (526), Expect = 2e-58
 Identities = 115/226 (50%), Positives = 156/226 (69%), Gaps = 5/226 (2%)

Query: 12  NKTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFA 71
           +K S+ ++Y PLV+  A  L  RLPASV+LDDLLQAG +GLL A  ++D  +G  F T+A
Sbjct: 12  DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71

Query: 72  GIRIRGAMLDEIRRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEIAEKLDMTLDEY 131
             RIRGAMLDE+R  DWVPRSV RN R +AQAI +LEQ LGR+A +TE+AE+L + + +Y
Sbjct: 72  VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131

Query: 132 HHILNDVSVGKIIGI----EDLGVSEDILTTSDNVSDGTFEVLAETQFHSALVEAIKILP 187
             +L D +  ++       E+ G S + L T D+  +   + L ++     ++EAI+ LP
Sbjct: 132 RQMLLDTNNSQLFSYDEWREEHGDSIE-LVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190

Query: 188 ERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKL 233
           ER+ LVL+LYY E LNLKEIGA+LEV ESRVSQ+ SQA+ RL+ KL
Sbjct: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236