Pairwise Alignments

Query, 237 a.a., RNA polymerase sigma-27 factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 648 a.a., RNA polymerase sigma factor RpoD from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 65.5 bits (158), Expect = 3e-15
 Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 16/229 (6%)

Query: 13  KTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFAG 72
           K  +VE    LV  IA     R    +Q  DL+Q G +GL++A  KF+  +G KF T+A 
Sbjct: 411 KKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 467

Query: 73  IRIRGAMLDEI---RRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEIAEKLDMTLD 129
             IR A+   I    R   +P  +     +I +   ++   +GR+    E+AEKL M L+
Sbjct: 468 WWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLE 527

Query: 130 EYHHIL----NDVSVGKIIGIEDLGVSEDILTTSDNVSDGTFEVLAETQFHSALVEAIKI 185
           +   +L      +S+   IG E+     D +   + V     +   ++         +  
Sbjct: 528 KVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVL--PIDAAIQSNLRETTTRVLAS 585

Query: 186 LPERDALVLSLYYDEALN----LKEIGAILEVSESRVSQILSQAMLRLK 230
           L  R+  VL + +   +N    L+E+G    V+  R+ QI ++A+ +LK
Sbjct: 586 LTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 634