Pairwise Alignments

Query, 130 a.a., DNA-binding protein, H-NS family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 134 a.a., DNA binding protein, nucleoid-associated from Escherichia coli BL21

 Score = 84.7 bits (208), Expect = 4e-22
 Identities = 48/134 (35%), Positives = 76/134 (56%), Gaps = 4/134 (2%)

Query: 1   MSEFLEILTHGRRFKAAVKDLSVEELRDLAAKLDKILVERESMEAEELQAIAARNAKIEE 60
           MS  L+ L + R  +A  ++ S++ L ++  K   +  ER   E ++ + +A R  KI  
Sbjct: 1   MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60

Query: 61  IRQQMEAVGLSIDDLGG---VAVKASSKKRAPRPAKYQI-EVDGEVIQWTGQGRMPTVFK 116
             + M+A G++ ++L G    A   + KKR PRPAKY+  +V+GE   WTGQGR P    
Sbjct: 61  WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120

Query: 117 NEVNKGRSMDDFLI 130
             + +G+S+DDFLI
Sbjct: 121 QALAEGKSLDDFLI 134