Pairwise Alignments

Query, 707 a.a., fatty oxidation complex, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 727 a.a., fatty acid oxidation complex subunit alpha FadB from Pantoea agglomerans CFBP13505 P0401

 Score =  406 bits (1043), Expect = e-117
 Identities = 266/711 (37%), Positives = 391/711 (54%), Gaps = 48/711 (6%)

Query: 4   GKTFNLTRREDGIAILTMDVPGETMNTLKAEFGPEISEILSEIKRDSSIRGLVLISGKKD 63
           G    L   +DGIA L  D  G ++N L  +    + E ++ +++   +RGL L+S  K 
Sbjct: 5   GANLTLHWLDDGIAELVFDATG-SVNKLDTQTVASLGEAIAVLEQQPELRGL-LLSSAKP 62

Query: 64  SFVAGADISMLDACQTAGDAKALSQ---QGHVVFNELEALNIPVVAAIHGACLGGGLELA 120
           +F+ GADI+   +   A   K LSQ     + +FN LE L +P +AAI G  LGGG E  
Sbjct: 63  AFIVGADITEFLSLFDAPTEK-LSQWLSYANSIFNRLEDLPVPTLAAIDGYALGGGCECV 121

Query: 121 LACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQAL 180
           LA   R+ + D +  +G+PE +LG++PG GG+ RLPRL+G  +AL+++  GK +    AL
Sbjct: 122 LATDLRIATADAR--IGLPETKLGIMPGFGGSVRLPRLLGADSALEIIAAGKDVDGNAAL 179

Query: 181 KMGLVNDVVPQTILLQTAVEMALA----GKQIAK------PVKKSLVNQLLEGTGFGRNI 230
           K+GLV+ VV +  L +  + M  A    G   A+      P+K S +   +  T      
Sbjct: 180 KLGLVDAVVSREKLREAGIIMLKAAATDGSWRARRAPKLAPLKLSPIEAAMSFT------ 233

Query: 231 IFDQAAKQVAKKTQG-NYPAPAKIIDCVRQGIAKGMQKGLEVEASHFAELVVSKESEALR 289
                AK +  +T G +YPAP   +  +    + G    L++E + F  L  S E+ AL 
Sbjct: 234 ----IAKAMVLQTAGKHYPAPLMAVKTIEAAASLGRDDALKLETAAFVPLAQSDEARALV 289

Query: 290 SIFFATTEMK---KETGAEGATPRKVKKAVILGGGLMGGGIASVTTTKAKIPARVKDINE 346
            IF     +K   K+ G+E   P +   A +LG G+MGGGI+  +  K  +P R+KDIN 
Sbjct: 290 GIFLNDQYVKGLAKKRGSESGAPAQ---AAVLGAGIMGGGISYQSAWKG-VPVRMKDINP 345

Query: 347 KGLSNALSYAYKLLDKGVKRRHMTPAARDNLMALMTTTTEYKGVKDADIVVEAVFEDLAL 406
           + L+  ++ A KLL+K ++R  +      +++A +  T +Y G + AD+VVEAV E+  +
Sbjct: 346 QALTLGMNEASKLLNKLLERGKIDGNKLASVIATIQPTLDYAGFEQADVVVEAVVENPLI 405

Query: 407 KHQMVKDIERECGEHTIFASNTSSLPIGQIAQAASRPENVIGLHYFSPVEKMPLVEVIAH 466
           K +++ + E+   +  I ASNTS++PI Q+AQA  RPEN  G+H+F+PV +MPLVEV+  
Sbjct: 406 KAKVLAETEQHLRKDAILASNTSTIPISQLAQALQRPENFCGMHFFNPVPRMPLVEVVRG 465

Query: 467 AKTSPETIATTVAFARKQGKTPIVVQDGAGFYVNRILALYMNEAAQLLLEGQSVEHLDKA 526
            KTS  T++  VA+A K GKTPIVV D  GF+VNR+L  Y    + LL +G     +DK 
Sbjct: 466 EKTSEATLSKVVAWASKMGKTPIVVNDCPGFFVNRVLFPYFAAFSLLLRDGADFRQIDKV 525

Query: 527 LVK-FGFPVGPITLLDEVGIDVGAKISPILEKELGERFKAP--AAFDKLLSDDRKGRKNG 583
           + K FG+P+GP  LLD VGID       ++     +R K     A D L    R G+KNG
Sbjct: 526 MEKQFGWPMGPSWLLDVVGIDTAHHAQSVMADGFPDRMKHDYRDAIDLLFDAGRFGQKNG 585

Query: 584 KGFYQYGAASKKK-------AVDETVYGVLGIKPGVDKEMSAVAERCVVQMLNEAVRCLD 636
           KGF+++    K K        VD  +  V   K     E   +  R ++ MLNE VRCL+
Sbjct: 586 KGFWRWEEDKKGKLTKVADTEVDTLLEQVCQPKRVFSDE--EILNRMMLPMLNEVVRCLE 643

Query: 637 AGIIASPRDGDIGAIFGIGFPPFLGGPFHYIDTLGADNLVKILERYQTQYG 687
             IIASP + D+  ++G+GFPPF GG F Y+DTLG  N+V    RY    G
Sbjct: 644 EKIIASPAEADMALVYGLGFPPFRGGAFRYLDTLGNSNVVDQARRYSALGG 694