Pairwise Alignments

Query, 1422 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  396 bits (1017), Expect = e-114
 Identities = 219/574 (38%), Positives = 340/574 (59%), Gaps = 11/574 (1%)

Query: 842  DDKDNALRMTGTIKNISQFKQKEEQLRLFEKAIENISEGMFILDSEYRFVEVNEACCRIS 901
            DD      + G  ++ISQ ++ E+ LR+     E+ +  + I D     V+ NEA  R+S
Sbjct: 690  DDDQRFEGVLGVGRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVS 749

Query: 902  QRNRSDFIGNL---LTFELYPESFSNQIRTMLKQQGRWASEVEANRGDNSHFHMELTIDA 958
                S+ +  L   LT +   E     +   L Q+G W  EV   R D  H+   + I A
Sbjct: 750  GYAVSEVLDQLPGMLTVDEQQEGHLRYVVKQLHQRGSWEGEVWLKRRDGDHYPAWVGITA 809

Query: 959  IYDELGELSHYVGVFSDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLVNKEINH 1018
            + D+ G+L+ YV  F+DIS RK  E+ + +L   D LT LPNR+  Q  L N + +    
Sbjct: 810  VLDDEGDLASYVCFFTDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQ 869

Query: 1019 ----ALMVLDLDNFKRINDSLGHQVGDKLLKLVSVRIKSSVPKNTNIYRLGGDEFAIVLD 1074
                 LM LDLD FK INDSLGH  GD++LK +++R+ + V  +  + R+GGDEF ++L 
Sbjct: 870  KAWVVLMFLDLDRFKPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQ 929

Query: 1075 K--TSDILASAAI--AGRIVDAFNTVYEIDNEQLVLGVSVGIVLYPDDEQNEQALLRKAD 1130
               T ++  + AI  A  I+ +    + ++N +  +  S+GI L P D      L++ AD
Sbjct: 930  PRPTREMALNRAIHVAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNAD 989

Query: 1131 IAMYHAKSAGGNCYQFYSESLNEHAIKQLETENLIREGLKEDLFEVYYQPKVDLKHGHVA 1190
             AMYHAK  G N +QFY   +N  A+++LE E+ +R  ++++ F +YYQP+       + 
Sbjct: 990  TAMYHAKERGKNNFQFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLT 1049

Query: 1191 GMEALVRLNHPTLGLIPPNDFIPLAEENGLIVEIGEIVLRKACFAAQKWREQGLFKGRVA 1250
            G EAL+R  HPT GL+PP DFIP+ EE GL+V++G+ VLR+A    + W +  +   +V+
Sbjct: 1050 GAEALLRWRHPTRGLVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVPKVS 1109

Query: 1251 VNLSSRQFALPDLQQRIESILRLTQLPASHLELEITEGTVIKQPEMAITVMQQLAKMGVS 1310
            VN+S+RQF+   L  RI +IL  + LP + LELE+TE  ++++   A+ ++  L  +G+S
Sbjct: 1110 VNISARQFSDGQLGTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLS 1169

Query: 1311 LALDDFGTGYSSLSYLKRFPIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVG 1370
            +A+DDFGTGYSSL+YLK+FPI  LKID+ FVD + + ++D ++  +II +AH++ L+V+ 
Sbjct: 1170 IAVDDFGTGYSSLNYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIA 1229

Query: 1371 EGVEQAAQLNILRALNCEEIQGYIFSKAINEAEF 1404
            EGVE   QL  LR   C+E+QGY+F + +   +F
Sbjct: 1230 EGVETHEQLEFLREHGCDEVQGYLFGRPMPAHQF 1263



 Score = 33.5 bits (75), Expect = 1e-04
 Identities = 44/227 (19%), Positives = 94/227 (41%), Gaps = 26/227 (11%)

Query: 785 GNRDEESNIHPMDQ---ERVREALNKHFYGETDHFEAAYRVKGKDDSWIWILDRAKIVER 841
           G+R  E  +HP D    + +R     + + +  H +  +R   +D SW     R +++ R
Sbjct: 492 GDRFWELLLHPEDAAHYQALRRQQRDNCHDQPLHCQLRFR--HRDGSWRCYDIREQVLTR 549

Query: 842 DDKDNALRMTGTIKNISQFKQKEEQLRLFEKAI----ENISEGMFILDSEYRFVEVNEAC 897
           + +    R+ G  K+++   +  + LR  E+      E+IS+ +F  D++ +   V+ + 
Sbjct: 550 NAEGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLAESISDVIFSTDNQLKLNYVSPSV 609

Query: 898 CRISQ---------------RNRSDFIGNLLTFELYPESFSN--QIRTMLKQQGRWASEV 940
             +                  N +   G     E   ++  +  Q+  +  Q        
Sbjct: 610 QSVLGYQADWIFANGWQSIVANPAQLTGIYSLMERVSKAMGDPAQMAQLCSQLPTQLFLF 669

Query: 941 EANRGDNSHFHMELTIDAIYDELGELSHYVGVFSDISRRKQQEEELR 987
           +  R D     +EL +  ++D+       +GV  DIS++++ E++LR
Sbjct: 670 DCLRADGRKIPIELRLVLVWDDDQRFEGVLGVGRDISQQRRAEKDLR 716