Pairwise Alignments

Query, 1422 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 631 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  392 bits (1006), Expect = e-113
 Identities = 218/545 (40%), Positives = 315/545 (57%), Gaps = 7/545 (1%)

Query: 862  QKEEQLRLFEKAIENISEGMFILDSEYRFVEVNEACCRISQRNRSDFIG---NLLTFELY 918
            +  E+LR+     ++  EG+ + D +   V VN A  RI+   + + IG   +      +
Sbjct: 79   EDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVIGQRPSKFKSGHH 138

Query: 919  PESFSNQIRTMLKQQGRWASEVEANRGDNSHFHMELTIDAIYDELGELSHYVGVFSDISR 978
              +F  ++   L ++G W+ E+   R     +    TI AI D+ GELSHYV VFSDIS 
Sbjct: 139  GLAFYQEVFATLAEKGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGELSHYVAVFSDISA 198

Query: 979  RKQQEEELRKLTNNDLLTGLPNR----SNLQVTLGNLVNKEINHALMVLDLDNFKRINDS 1034
             K  E+EL  L ++D LTGLPNR      L+  L      +   AL++LDLD+F+ IND 
Sbjct: 199  IKHSEQELAYLAHHDPLTGLPNRLLFTDRLEQALAAAQANKRGCALLLLDLDHFQSINDG 258

Query: 1035 LGHQVGDKLLKLVSVRIKSSVPKNTNIYRLGGDEFAIVLDKTSDILASAAIAGRIVDAFN 1094
            LGH +GD+LLKLV  R+   +     + RLGGDEF ++++    +  +  +A  I++   
Sbjct: 259  LGHTIGDQLLKLVGERLGEVLGNGVTLARLGGDEFGVLVENCQQVGQAGKLAQCIIERMR 318

Query: 1095 TVYEIDNEQLVLGVSVGIVLYPDDEQNEQALLRKADIAMYHAKSAGGNCYQFYSESLNEH 1154
              ++ D  +L +  SVGI LYP D    + LLR AD A+Y AKS G  CY  Y+E L  H
Sbjct: 319  EPFQFDGNRLFISASVGISLYPSDALGAEQLLRNADSALYKAKSNGRACYALYTEELTAH 378

Query: 1155 AIKQLETENLIREGLKEDLFEVYYQPKVDLKHGHVAGMEALVRLNHPTLGLIPPNDFIPL 1214
            A  ++ET   +R  L++D   VY+QP  DL  G   G+E LVR  HP  GL+PP +FIP+
Sbjct: 379  AQHRVETAAELRRALEQDELRVYFQPVHDLASGRQVGVETLVRWQHPRRGLVPPGEFIPI 438

Query: 1215 AEENGLIVEIGEIVLRKACFAAQKWREQGLFKGRVAVNLSSRQFALPDLQQRIESILRLT 1274
            AE  GLI EI   VLR+AC    +W+ QG     V VN+SSR F   +L +++  +L  T
Sbjct: 439  AERTGLIAEIDTWVLRQACRQMVQWQAQGRQLAFVGVNISSRLFGQHELYRQVAEVLHDT 498

Query: 1275 QLPASHLELEITEGTVIKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHTL 1334
             L  + LELE+TE  V++ PE+A+  + +L ++GV+LA+DDFGTGYSSL  LKR P+  L
Sbjct: 499  GLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSSLLRLKRLPVQKL 558

Query: 1335 KIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEEIQGYI 1394
            KID+ FV  +   + D+ +V  II +A +MG+ V  EG+EQA Q + L    C+  QGY 
Sbjct: 559  KIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASFLLQEECQLGQGYW 618

Query: 1395 FSKAI 1399
            F + +
Sbjct: 619  FGRPV 623