Pairwise Alignments

Query, 700 a.a., ferric alcaligin siderophore receptor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 811 a.a., ligand-gated channel from Pseudomonas simiae WCS417

 Score =  413 bits (1061), Expect = e-119
 Identities = 251/687 (36%), Positives = 364/687 (52%), Gaps = 16/687 (2%)

Query: 23  NVVGAKDLHDKRYKTPAMNTATGLDLSYLETPQSVTSVTRQMMQDQQLNSVIEAMTSVAG 82
           NV+G        Y    + TAT L L+  ETPQS+T +TRQ ++D  LN+V + M    G
Sbjct: 132 NVLGNITEGSGSYTPGTIATATRLTLTPRETPQSITVITRQHIEDFGLNNVDDVMRHTPG 191

Query: 83  INARPMDNDRYSISSRGIAVTSILYDGVPTTY-DTRFNYGDNLIDTAIYERVEIVRGATG 141
           I     D DR +  SRG +V S  YDG+P+T  +  ++ G+ L D AIY+RVE+++GATG
Sbjct: 192 ITVSAYDTDRTNYYSRGFSVNSFQYDGIPSTVRNVGYSAGNTLSDMAIYDRVEVLKGATG 251

Query: 142 LMTGAGNPSAAINLVRKRPTQEFMGSTSVSVGSWNNLRGMVDLSSGLTDSGNIRGRVVAA 201
           L+ GAG+  A INL+RK+PT EF G   +  GSW+N R  VD+S  LTDSGN+RGR VAA
Sbjct: 252 LLNGAGSLGATINLIRKKPTSEFKGHVQLGAGSWDNYRSEVDVSGPLTDSGNVRGRAVAA 311

Query: 202 YQDKESFQDRYQQQRTTLYGIVETDISDSTLLTLGADYQDTTPE-ATMSGGLPLFHSDGS 260
           YQDK+SF D Y ++  T YGI E D+S  T+LT+G DYQD  P+ ++ SG  PL +S+GS
Sbjct: 312 YQDKKSFMDHYSRKTETYYGITEFDLSPDTMLTVGFDYQDNIPKGSSWSGSFPLVNSNGS 371

Query: 261 RTNYDRATSTAPDWASAHTQGLNSFASLEHRFDNGWELKGTYSYGDNSLEYNVLWATGYP 320
                R+ +    W+S       +FA LEH   +GW  K    +  NS   + L +  + 
Sbjct: 372 INKMPRSYNNGTTWSSWEQNTRTAFAMLEHDMGDGWVTKFQLDHKINSYHAD-LGSIQFV 430

Query: 321 DPVTNLGATAGSIAYIDGSRTQHNLDLRAQGMFALFGQEHQLTFGWT-GQRQEFANPYYY 379
            P  +  A      Y  G     + DL A G F+LFG+EH+L  G + G  +     Y+ 
Sbjct: 431 QPAADGTAEINGQKY-TGETKSTSADLYATGPFSLFGREHELVVGGSIGTSRWQGKGYWS 489

Query: 380 PTAAVPPLGDFRDPNFQYPKPQWKETHTTGSFGETEQSAAYVATQLNLTDALALLAGLRL 439
           P        DF + N    KP +             Q+  Y+ T+LN+ D L ++ G R+
Sbjct: 490 PEWPGGNKVDFYNWNGHIAKPIYGPVQQYID-DTIRQTGYYMTTRLNVMDDLHVILGGRV 548

Query: 440 NQWQTDQNNFGSLYDFNVDNELTTYLGLTYALTEQYSLYASYTDIFAPQ--TLQRIDASY 497
             +       G    +        Y G+ Y L +  S YASYTDIF PQ  T +  +   
Sbjct: 549 ANYHVT----GINPSYKETGRFVPYAGVVYDLNDNISAYASYTDIFQPQESTYKDRNQKL 604

Query: 498 IDPVKGKNYEAGIKASLMDESLDMSLSVFEIRQDNVGERTGDVLPGTTIPVYREVNGTQ- 556
           ++P +G+NYE G+K   +D  L+ S++ FE+ + N           T  P      G++ 
Sbjct: 605 LEPDEGQNYELGLKGDFLDGRLNASVAYFEVHETNRAISDDAYNNQTPAPSNYAFKGSKA 664

Query: 557 -TQGFEFESTGKITDDWNIYFGYTQFSTDDPKGNRINTTSPRQQLKLFTTYTFSGDWNKL 615
            T+G+E E +G+++  W +  GYT     D    +I+T  P  Q+ L TTY   GD ++ 
Sbjct: 665 VTKGYEAEVSGELSPGWQVQGGYTHKIVRDDNDKKISTFEPEHQVNLNTTYKLKGDLDQF 724

Query: 616 QLGAGVNWQSR-VYQTVNSPLG-RVEVEQDSYALASLMTSYAFTEQLKLSANVHNALDKT 673
            +G G+ WQS+  Y+  NSPL    ++ Q +Y L  LMT Y  T+ L  + N +N  DK+
Sbjct: 725 TIGGGLRWQSKGWYEIYNSPLNTNQDITQKAYWLVDLMTRYQVTKNLSATVNFNNIFDKS 784

Query: 674 YYSQVGQYSQFQYGTPRSVSVNLDYRF 700
           YY+ VG Y+   YG PR+V  +  + F
Sbjct: 785 YYTNVGFYNSAAYGEPRNVMFSTRWDF 811