Pairwise Alignments

Query, 419 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 424 a.a., Prophage integrase IntA from Pseudomonas sp. DMC3

 Score =  109 bits (272), Expect = 2e-28
 Identities = 114/407 (28%), Positives = 174/407 (42%), Gaps = 29/407 (7%)

Query: 1   MALSDSWLKANLNKVADKPYEKADRDGLSVRVSAKGAITFQMRYRWASNAARVDI--GPY 58
           + LSD  LK    K A K Y   D DGL +RV + G++ +   YR      R++I  G Y
Sbjct: 6   LRLSDRQLKGV--KPASKDYVLTDGDGLQLRVRSNGSLLWNFNYREPVTKKRINIGFGTY 63

Query: 59  PLLSLKEAREQCEAYRKLLLDNQDPREYKRD-KAAKAVSNEGSVEQVFRAWHKSQFSDGR 117
           P LSL  AR++    R+LL    DP+  +     AK    E + E V  AW    F   +
Sbjct: 64  PELSLANARKKAVEARELLAQGIDPKVQRSTLNEAKRAETEHTFENVATAW----FELKK 119

Query: 118 ASVKDSTAHEYLRALEINVFPVLGKKQVDQVTLHQWLDLFESIAAK--KPTITNLTLTVS 175
            SV  + A +  R+L ++VFP L    + ++T    + L   I AK    T+  L+  ++
Sbjct: 120 DSVTPAYAEDIWRSLTLHVFPDLKTTPLTKITAPMVIALLRPIEAKGSLETVKRLSQRLN 179

Query: 176 RRALKWAVRRRIISTNELMGIESKEDLNISRKSRKRTLSDDELKIILQAIDNAKRQRLGN 235
              + + V   +I  N L GI +       +K     L  +EL  ++  I NA  +R   
Sbjct: 180 -EIMTYGVNSGLIFANPLTGIRAV--FKKPKKENMAALPPEELPELMLEIANASIKRT-T 235

Query: 236 RIMVFMALFFGCRIGELRLAQKAHFDFTKMIWTVPVENHKTGYKMQRPLLRPIIDEIVPL 295
           R ++   L    R  E    +    DF + +WT+P E      K +RP   P+ D  V L
Sbjct: 236 RCLIEWQLHTMTRPAEAATTRWTDIDFERRVWTIPPER----MKKRRPHSIPLSDHAVAL 291

Query: 296 LE-LAFSLSPNELVFPTEKGGIYSQAATTRMSNPINTWAKLNGTPLNEWYLHDLRRTQRT 354
           LE L       E VFP ++        T   S   N   K  G   +    H +R    T
Sbjct: 292 LESLKTHSGHREYVFPADR-----NPRTHANSQTANMALKRMGFQ-DRLVSHGMRSMAST 345

Query: 355 NMSKI-TTTEVAETMLGH-KLSGIQSIYDHYDYLEEQAKAYRIWWQK 399
            +++     E+ E  L H     ++S Y+  DY+E + +    WW +
Sbjct: 346 ILNEHGWDPELIEVALAHVDKDEVRSAYNRADYIERR-RPMMAWWSE 391