Pairwise Alignments

Query, 419 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 413 a.a., tyrosine-type recombinase/integrase from Pseudomonas fluorescens SBW25

 Score =  106 bits (265), Expect = 1e-27
 Identities = 110/399 (27%), Positives = 170/399 (42%), Gaps = 34/399 (8%)

Query: 18  KPYEKADRDGLSVRVSAKGAITFQMRY-RWASNAARVDIGPYPLLSLKEAREQCEAYRKL 76
           K Y + D +GL  RV   G  ++Q+RY R A N A + +G YP +S   ARE+    RK+
Sbjct: 24  KEYRELDGNGLYFRVKPDGGKSWQLRYKRPAGNWAWMGLGGYPEVSGALAREKAADLRKV 83

Query: 77  LLDNQDPREYKRD-KAAKAVSNEGSVEQVFRAWHKSQFSDGRASVKDSTAHEYLRALEIN 135
           +    DP E KR  KAA   +   +      AW K++   G A+   ST H+    L+ +
Sbjct: 84  VSSGADPLEQKRSAKAAIDAAKARTFRAAAEAWLKAKEEKGLAT---STLHKIRTYLDKD 140

Query: 136 VFPVLGKKQVDQVTLHQWLDLFESIAAKKPTITNLTLTVSRRALKWA--VRRRIISTNEL 193
           + P LG K +D++T     DL  S+ A+          V+ +   W   +  R I     
Sbjct: 141 ILPALGDKPLDEITRTDCADLQASLEARDAH------NVAEKCRTWINQIFGRAIGLGLT 194

Query: 194 MGIESKEDLNISRKSRKRT----LSDDELKIILQAIDNAKRQRLGNRIMVFMALFFGCRI 249
                    +I+ ++ K      L + EL   LQA+ N    RL  R   ++ ++   R 
Sbjct: 195 ENDPGSRLRDIAAQAPKTQQHPHLLEPELAEFLQALKNTP-SRLTARTAAWLCIWTASRP 253

Query: 250 GELRLAQKAHFDFTKMIWTVPVENHKTGYKMQRPLLRPIIDEIVPLL-ELAFSLSPNELV 308
           G +RLA+   FD  K IWT P        KM+R  + P+  + V  L +L      +  +
Sbjct: 254 GMVRLAEWKEFDLEKAIWTTPAAK----MKMRRDFVCPLPHQAVTALRDLHCLTGRSRWL 309

Query: 309 FP--TEKGGIYSQAATTRMSNPINTWAKLNGTPLNEWYLHDLRRTQRTNMSKI-TTTEVA 365
           FP    K    S+    ++   I    +L G        H  R T  T + +     E  
Sbjct: 310 FPGVGAKNPTISENTINKVFATIGYKGRLVG--------HGTRHTASTLLREHGWPKEHV 361

Query: 366 ETMLGHKLSGIQSIYDHYDYLEEQAKAYRIWWQKLQRLK 404
           E  L HK  GI  +Y+   Y E++ K  + +   L  L+
Sbjct: 362 EAQLAHKEEGISGVYNKAQYFEQRVKMMQWYADHLDSLE 400