Pairwise Alignments

Query, 419 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 418 a.a., tyrosine-type recombinase/integrase from Pectobacterium carotovorum WPP14

 Score =  105 bits (261), Expect = 3e-27
 Identities = 99/410 (24%), Positives = 190/410 (46%), Gaps = 25/410 (6%)

Query: 1   MALSDSWLKANLNKVADKPYEKADRDGLSVRVSAKGAITFQMRYRWASNAARVDIGPYPL 60
           MAL+D  + A   K  DK Y+ AD  GL + VS  G+  + ++YR+    +R+  G YPL
Sbjct: 1   MALTD--VVARTAKPRDKAYKLADAHGLYLLVSPNGSKRWYLKYRFEGKESRIAFGAYPL 58

Query: 61  LSLKEAREQCEAYRKLLLDNQDPREYKRDKAAKAVSNEGSVEQVFRAWHKSQFSDGRASV 120
           +SL +ARE+ +  R LLL+   P E + ++  +A     +  +V + WH++  S  R S 
Sbjct: 59  VSLAKAREKRDEIRLLLLEGIHPTEKREEEKEQAQEALNTFAKVAQDWHRN-ISQNRWS- 116

Query: 121 KDSTAHEYLRALEINVFPVLGKKQVDQVTLHQWLDLFESI-AAKKPTITNLTLTVSRRA- 178
            ++ A    R +E N+ P +G + +  +   +  DL E +   ++    +L   + +R  
Sbjct: 117 -ETHAGRVWRDMERNLLPAIGHRHIADL---KTKDLLEPLKVVEQNGHLDLASRLRQRVT 172

Query: 179 --LKWAVRRRIISTNELMGIESKEDLNISRKSRKRTLSDDELKIILQAIDNAKRQRLGNR 236
             +++AV+  +I  N    +     +   + + +  L  ++L   L  I+  K + L  R
Sbjct: 173 DIMRFAVQNDLIERNPAQDLSGA--IAAPKATHRPALKLNKLPDFLARIERHKGRAL-IR 229

Query: 237 IMVFMALFFGCRIGELRLAQKAHFDFTKMIWTVP--------VENHKTGYKMQRPLLRPI 288
           + + + L    R  ELR A+    DF + +WT+P        V++ + G KM+   L P+
Sbjct: 230 LALKLTLCVFIRSSELRFARWPEIDFKRAMWTIPAERAAIPGVKHSQRGAKMRSEHLVPL 289

Query: 289 IDEIVPLLELAFSLS-PNELVFPTEKGGIYSQAATTRMSNPINTWAKLNGTPLNEWYLHD 347
             + + LLE   ++S  +EL+FP ++      +  T ++N + T      T +       
Sbjct: 290 SRQALALLEEIKAISGAHELIFPGDRRPTKPMSENT-VNNALRTMGYDTTTEVCGHGFRT 348

Query: 348 LRRTQRTNMSKITTTEVAETMLGHKLSGIQSIYDHYDYLEEQAKAYRIWW 397
           +  +      + +   V   M   + +G+++ Y H     ++ +    WW
Sbjct: 349 MACSALVESGQWSRDAVERQMSHQERNGVRAAYIHKAEHLDERRLMLQWW 398