Pairwise Alignments

Query, 419 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 419 a.a., tyrosine-type recombinase/integrase from Pectobacterium carotovorum WPP14

 Score = 99.0 bits (245), Expect = 2e-25
 Identities = 94/315 (29%), Positives = 151/315 (47%), Gaps = 35/315 (11%)

Query: 14  KVADKPYEKADRDGLSVRVSAKGAITFQMRYRWASNAARVDIGPYPLLSLKEAREQCEAY 73
           K  DKPY+ +D  GL + +   G+  + ++YR+     ++  G YP +SL  AR+  E  
Sbjct: 12  KPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGGKEKKLAFGAYPTVSLASARKLREEA 71

Query: 74  RKLLLDNQDPREYKR-DKAAKAVSNEGSVEQVFRAWHKSQFSDGRASVKDSTAH--EYLR 130
           R +L    DP   K+ DK AK   N  + E V R W         A+++ S AH  + LR
Sbjct: 72  RTILSAGDDPGVKKQHDKQAK--KNGNTFEAVARQW-------VGANIRWSEAHAAKVLR 122

Query: 131 ALEINVFPVLGKKQV-DQVTLHQWLDLFESIAAKKPTITNLTLTVSRRA--LKWAVRRRI 187
           +LE++VFP++G   V D  T +  + L   +A KK  +        R    +++AV+  +
Sbjct: 123 SLELHVFPLIGNVLVTDLKTANLLIPL--RVAEKKGCLETAARIQQRTTVIMRYAVQEGL 180

Query: 188 IST---NELMGIESKEDLNISRKSRKRTLSDDELKIILQAIDNAKRQRLGNRIMVFMALF 244
           I++   N+L G      +    K+    L  ++L  +L+ I+     RL  R+ V + L 
Sbjct: 181 IASNPANDLCGA-----ITPPPKNHYPALPLEKLPELLERIEGYS-GRLLTRLAVQLNLL 234

Query: 245 FGCRIGELRLAQKAHFDFTKMIWTVP--------VENHKTGYKMQRPLLRPIIDEIVPLL 296
              R  ELR A+    D    +WT+P        V + + G KM+ P L P+  + V +L
Sbjct: 235 IFIRSSELRFARWVEIDLDNAMWTLPAQREPIAGVRHSERGAKMKTPHLVPLSKQAVTVL 294

Query: 297 ELAFSLSPN-ELVFP 310
           +    LS N EL+FP
Sbjct: 295 KQLKLLSGNGELLFP 309