Pairwise Alignments

Query, 419 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 424 a.a., Integrase from Escherichia coli ECRC98

 Score = 99.8 bits (247), Expect = 1e-25
 Identities = 105/405 (25%), Positives = 177/405 (43%), Gaps = 40/405 (9%)

Query: 14  KVADKPYEKADRDGLSVRVSAKGAITFQMRYRWASNAA--RVDIGPYPLLSLKEAREQCE 71
           K  DK Y+ AD  GL + VSAKG+  ++M+YR  S+    R+  G +P ++L EAR + +
Sbjct: 12  KPKDKSYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAEARTRRD 71

Query: 72  AYRKLLLDNQDPREYKRDKAAKAVSNEGSV--EQVFRAWHKSQ---FSDGRASVKDSTAH 126
             +KLL    DP+  +++  A+   N G+   E + R WH S      D RA V      
Sbjct: 72  EAKKLLAQGIDPKAVQKEAQAE---NAGAYNFETIAREWHASNKRWSEDHRARV------ 122

Query: 127 EYLRALEINVFPVLGKKQVDQV-TLHQWLDLFESIAAKKPTITNLTLTVSRRALKWAVRR 185
             LR LE+ +FP +G   + Q+ T H    + +  A+ K  +           +++AV+ 
Sbjct: 123 --LRYLELYIFPYIGLSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN 180

Query: 186 RIISTNELMGIESKEDLNISRKSRKRTLSDDELKIILQAIDNAKRQRLGNRIMVFMALFF 245
             I +N    +     L+ ++      L        L  +  A R R+  +I V ++L  
Sbjct: 181 DYIDSNPASDMAGA--LSTAKTRHYPALPSHRFPEFLARLA-AYRGRMMTKIAVELSLLT 237

Query: 246 GCRIGELRLAQKAHFDFTKMIWTVPVENHK--------TGYKMQRPLLRPIIDEIVPLLE 297
             R  ELR A+   FDF K +W +P +  +         G KM+   L P+  + + LLE
Sbjct: 238 FVRSSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHLVPLSRQAIGLLE 297

Query: 298 LAFSLSPNE-LVFPTEKGGIYSQAATTRMSNPINTWAKLNG-TPLNEWYLHDLRRTQRTN 355
               +S ++ L+FP +       A      N +N   +  G     E   H  R   R  
Sbjct: 298 QLKQISGDKTLLFPGD-----HDATKVMSENTVNNALRAMGYDTKTEVCGHGFRTMARGA 352

Query: 356 M--SKITTTEVAETMLGH-KLSGIQSIYDHYDYLEEQAKAYRIWW 397
           +  S + + +  E  L H + + +++ Y H     ++ +    WW
Sbjct: 353 LGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWW 397