Pairwise Alignments

Query, 419 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 393 a.a., integrase from Escherichia coli ECRC98

 Score =  105 bits (262), Expect = 2e-27
 Identities = 99/397 (24%), Positives = 175/397 (44%), Gaps = 31/397 (7%)

Query: 18  KPYEKADRDGLSVRVSAKGAITFQMRYRWASNAARVDIGPYPLLSLKEAREQCEAYRKLL 77
           K Y   D  GLS+ +   G+ +++ RYR+A     + +G YP ++L +AR + +  RKL+
Sbjct: 16  KAYTFGDGLGLSLLIEPNGSKSWRFRYRYAGKPKMISLGVYPTITLADARSRRDEARKLV 75

Query: 78  LDNQDPREYKRD-KAAKAVSNEGSVEQVFRAWHKSQFSDGRASVKDSTAHEYLRALEINV 136
            + ++P E +++ K A    +E + E++ R WH+ + +   A      A + + A + ++
Sbjct: 76  AEGKNPSEVRKEQKLAMQTESENAFEKIAREWHQLKSAKWSAGY----ASDIMEAFKNDI 131

Query: 137 FPVLGKKQVDQVTLHQWLDLFESIAAKKPTITNLTLTVSR--RALKWAVRRRIISTNELM 194
           FP +G + V ++   + L++   I  K+  +  +     R     ++A+       N   
Sbjct: 132 FPYVGTRPVGEIKPLELLNVLRKI-EKRGALEKMRKVRQRCSEVFRYAIATGRAEYNPAA 190

Query: 195 GIESKEDLNISRKSRKRTLSDDELKIILQAIDNAKRQRLGNRIMVFMALFFGCRIGELRL 254
            + S   L + + +    L  DE+   L+A++     +L  +I   + +  G R  ELR 
Sbjct: 191 DLSSA--LEVHQSNHFPFLKADEIPDFLRALEGYSGSKL-VQIATKLLMITGVRTIELRA 247

Query: 255 AQKAHFDFTKMIWTVPVENHKTGYKMQRPLLRPIIDEIVPLL-ELAFSLSPNELVFP--T 311
           A    FD    IW +P E      KM+RP L P+  + V LL EL         VFP   
Sbjct: 248 ALWQEFDLDNAIWEIPAER----MKMRRPHLVPLSSQAVDLLNELKIMTGNYRYVFPGRN 303

Query: 312 EKGGIYSQAATTRMSNPINTWAKLNGTPLNEWYLHDLRRTQRTNMSKITTTEV-AETMLG 370
           +     S+A+  +    I    K+ G        H  R T  T + +        E  L 
Sbjct: 304 DPNRPMSEASINQAIKRIGYGGKVTG--------HGFRHTLSTILHEQGFESAWIEIQLA 355

Query: 371 H-KLSGIQSIYDHYDYLEEQAKAYRIWWQKL--QRLK 404
           H   + I+  Y+H  Y   + K+   W+  L  +RLK
Sbjct: 356 HVDKNSIRGTYNHAQYFSGR-KSMMDWYSNLIFERLK 391