Pairwise Alignments

Query, 419 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 409 a.a., integrase from Escherichia coli ECRC101

 Score =  154 bits (389), Expect = 5e-42
 Identities = 128/427 (29%), Positives = 201/427 (47%), Gaps = 37/427 (8%)

Query: 3   LSDSWLKANLNKVADKPYEKADRDGLSVRVSAKGAITFQMRYRWASNAA----RVDIGPY 58
           LSD+ L+      A K     D   LSVR S  G +T+   YR  +       R+ +G Y
Sbjct: 8   LSDTQLRKINGTPAQKTAFLNDGGNLSVRHSTSGLLTWYFTYRAGTGRGAPPERIKLGNY 67

Query: 59  PLLSLKEAREQCEAYRKLLLDNQDPRE---YKRDKAAKAVSNEGSVEQVFRAWHKSQFSD 115
           P LSLK ARE+    R  L + ++PR    Y   +A K V+    V      W +S   +
Sbjct: 68  PDLSLKSAREKAAQCRAWLAEGKNPRHELNYTVQEALKPVT----VGDALTYWLESYAKE 123

Query: 116 GRASVKDSTAHEYLRALEINVFPVLGKKQVDQVTLHQWLDLFESIAAKKPTITNLTLTVS 175
            R    D  A +  + L  +V   +G   +D+  L  WL  F+ +A + P      L   
Sbjct: 124 NRV---DYAALK--KRLNNHVIQHIGAMPLDKCELRHWLACFDQVAKRTPVTAGFLLQTC 178

Query: 176 RRALKWAVRRRIISTNELMGIESKEDLNISRKSRKRTLSDDELKIILQAIDNAKRQRLGN 235
           ++ALK+  RRR   +N L  + S  D+       +R LS  EL  +LQA+D  K      
Sbjct: 179 KQALKFCRRRRYAISNVLDDM-SVADVGKKPDISERVLSTKELGELLQALDK-KIFSPYY 236

Query: 236 RIMVFMALFFGCRIGELRLAQKAHFDFTKMIWTVPVENHKTGYKMQRPLLRPIIDEIVPL 295
             ++ + + FGCR  ELRL++ + +DFT+M+WTVP E+ KT    +  + RPI + I+P 
Sbjct: 237 IALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKT----KVAIFRPIPEAILPF 292

Query: 296 LELAFSLSPNELVFPTEKGGIYSQAATTRMSNPINTWAKLNGTPLN--EWYLHDLRRTQR 353
           +         +LV      G+       +    ++ + +L    LN   W LHD+RRT  
Sbjct: 293 I--------TQLVEQNRHTGLL--LGEVKQEASVSQYGRLAHRRLNHPHWSLHDIRRTFT 342

Query: 354 TNMSKI-TTTEVAETMLGHKLSGIQSIYDHYDYLEEQAKAYRIWWQKLQRLKDPAAYHNV 412
           T ++ +     V E + GH++ G+Q +Y+H  YL+ +  A  +W ++L  L     + NV
Sbjct: 343 TMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALDMWTERLGIL--AGTHENV 400

Query: 413 VELKAAQ 419
             L  A+
Sbjct: 401 TTLPVAR 407