Pairwise Alignments

Query, 419 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 394 a.a., integrase from Escherichia coli ECOR38

 Score = 99.8 bits (247), Expect = 1e-25
 Identities = 82/313 (26%), Positives = 148/313 (47%), Gaps = 18/313 (5%)

Query: 1   MALSDSWLKANLNKVADKPYEKADRDGLSVRVSAKGAITFQMRYRWASNAARVDIGPYPL 60
           MAL+D  +K    K  DKPY+ AD  G+ + ++  G+  ++M+YR+A     + IG YP 
Sbjct: 1   MALTD--IKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPD 58

Query: 61  LSLKEAREQCEAYRKLLLDNQDPREYKR-DKAAKAVSNEGSVEQVFRAWHKSQFSDGRAS 119
           ++L +ARE+    RKLL    DP E K+ +K A+ +S + + E + R WH+S+       
Sbjct: 59  VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQISLKNTFEAIAREWHQSKADRWSLR 118

Query: 120 VKDSTAHEYLRALEINVFPVLGKKQVDQVTLHQWLDLFESIAAKKPTITNLTLTVSR--R 177
            +D    E +   E ++FP +GK+ + ++   + L+    +  K+  +  +     R   
Sbjct: 119 YRD----EIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKM-EKRGALEKMRKVRQRCGE 173

Query: 178 ALKWAVRRRIISTNELMGIESKEDLNISRKSRKRTLSDDELKIILQAIDNAKRQRLGNRI 237
             ++A+       N    + S   L   +K     L+ +EL   L  +       +  + 
Sbjct: 174 VFRYAIVTGRADYNPAPDLASA--LATPKKVHFPFLTANELPHFLNDLAGYTGSII-TKT 230

Query: 238 MVFMALFFGCRIGELRLAQKAHFDFTKMIWTVPVENHKTGYKMQRPLLRPIIDEIVPLLE 297
              + +  G R  ELR A+    DF   +W +P E      KM+RP + P+ ++++ L +
Sbjct: 231 ATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE----VMKMKRPHIVPLSEQVIMLFK 286

Query: 298 LAFSLSPNE-LVF 309
               +S +  LVF
Sbjct: 287 QLEPISKHHPLVF 299