Pairwise Alignments

Query, 419 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 420 a.a., integrase from Escherichia coli ECOR38

 Score =  112 bits (281), Expect = 2e-29
 Identities = 87/311 (27%), Positives = 148/311 (47%), Gaps = 26/311 (8%)

Query: 14  KVADKPYEKADRDGLSVRVSAKGAITFQMRYRWASNAARVDIGPYPLLSLKEAREQCEAY 73
           K +DKP++ +D  GL +RV    +  + ++YR +   +R+ +G YP +SL +AR+Q E  
Sbjct: 12  KPSDKPFKVSDSHGLYLRVKPGSSRHWYLKYRISGKESRIALGTYPAISLSDARQQREGI 71

Query: 74  RKLLLDNQDPREYKRDKAAKAVSNEGSVEQVFR----AWHKSQFSDGRASVKDSTAHEYL 129
           RK+L  N +P + +      AV    + E+VF+    AWHKS           +TA   L
Sbjct: 72  RKMLALNINPVQQR-----AAVRGSRTPEKVFKNVALAWHKS-----NRKWSQNTADRLL 121

Query: 130 RALEINVFPVLGKKQVDQVTLHQWLDLFESIAAK-KPTITNLTLTVSRRALKWAVRRRII 188
            +L  ++FPV+G   V ++    ++DL + I  K    + + T       ++ AV + +I
Sbjct: 122 ASLNNHIFPVIGNLPVSELKPRHFIDLLKGIEEKGLLEVASRTRQHLSNIMRHAVHQELI 181

Query: 189 STNELMGIESKEDLNISRKSRKRTLSDDELKIILQAIDNAKRQRLGNRIMVFMALFFGCR 248
            TN    +       + R      L  + L  +L+ I    + R   R  V + L    R
Sbjct: 182 DTNPAANLGGVTTPPVRR--HYPALPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIR 239

Query: 249 IGELRLAQKAHFDFTKMIWTVP--------VENHKTGYKMQRPLLRPIIDEIVPLLELAF 300
             ELR A+ +  DFT  +WT+P        V     G KM+ P + P+ ++ + +L+   
Sbjct: 240 SSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIK 299

Query: 301 SLS-PNELVFP 310
            ++  NEL+FP
Sbjct: 300 DITGNNELIFP 310