Pairwise Alignments

Query, 557 a.a., prophage LambdaSo, type II DNA modification methyltransferase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 609 a.a., DNA cytosine methyltransferase family protein from Pseudomonas putida KT2440

 Score =  375 bits (963), Expect = e-108
 Identities = 236/604 (39%), Positives = 324/604 (53%), Gaps = 80/604 (13%)

Query: 2   RGLIVDNFAGGGGASTGMAWALGRSVDIAINHDQDAIAMHSANHPETLHYCESVFDVDPV 61
           R L VD FAG GGAS+G A A  R  DIAINH+  AIA+H ANH +T HY   +++VDP+
Sbjct: 21  RELYVDLFAGAGGASSGGARAY-RDPDIAINHNPIAIAVHRANHRKTRHYICDIYEVDPL 79

Query: 62  QATAGKPVALAWFSPDCKHFSKAKGTKPVNKEIRGLAWVTIRWAMKVRPRVIMLENVEEF 121
           +AT G+PV + W SPDC+HFSKAKG  P +K +R L WV + W    RPR++++ENVEEF
Sbjct: 80  EATGGQPVGILWASPDCRHFSKAKGGAPRSKAVRSLPWVVVHWVFATRPRLLLMENVEEF 139

Query: 122 KTWGPLIQCPVTDAMHPCPERKGETFNAFVSMLSTGVDADHPALTECVETLG-LLDSAKL 180
           + WGPL      D   P     G TF AFV+ L+TG+ ADHP ++E ++ +G  +    L
Sbjct: 140 QAWGPL-----NDEGKPIKSEMGRTFKAFVACLTTGLPADHPDMSEVMDCIGQWVPMDAL 194

Query: 181 IKGLGYKVEFRELRACDYGAPTIRKRLFMIARCDGQPIVWPQPTHGAPDSEAVKSGKLLP 240
           ++GLG  VE+RE RA + G+PTIRKRLF+I R DG+PIVW +P       E  K G+ LP
Sbjct: 195 VRGLGCNVEWRERRASNAGSPTIRKRLFLIGRTDGRPIVWTKPKR----HENPKPGQ-LP 249

Query: 241 WRTAAECIDWSLPCKSIFGRKKPLAENTLRRIAKGIQRFVIDAKEPFIVPNDVQ--LAPF 298
           WRTAAECID+S   KS+F RK+PL +NT RR+AKG  R  + A++PF++  D Q   A  
Sbjct: 250 WRTAAECIDFSDLGKSLFARKRPLVDNTCRRVAKGFWRHTVMAEQPFVLQLDEQKLAAAS 309

Query: 299 ITEHANASSQRNMPVNEPLRTICAQVKGGHFAVVQPVLEKVNDNIPTFTEWFAKTKNFGG 358
           +TE ANAS+QR     EPLRT  AQ+KGGHFA+    L        T          +  
Sbjct: 310 LTEFANASTQRTFSAGEPLRTQVAQIKGGHFALAAAHL--------THLTHHGDRSGYPV 361

Query: 359 SYEEYVSLYGDDQLTDPVLTAANICKHYGGNYTGPGDDLNNPLPTVTT-VDHNALITSHM 417
           S E   ++ G ++    ++TA+ I    G   +G    +++P+  +TT   H+A+   H 
Sbjct: 362 S-EPTRTITGANRGEQALITASMITLRKGSTSSG----MDHPVNALTTGSGHHAVAACHF 416

Query: 418 IKLRG---TNIGFPMDEPAHTITAGGLHLGEVRAFFIKYYGNEQDGVACNEPLHTITTND 474
            +  G      G     P  TI   G +     A+ +KYYG         EP+HT+ T +
Sbjct: 417 EQANGGFYKGDGRAAKVPLSTILGRGTNQRLASAYLVKYYGTGGQWQDMGEPMHTLPTKE 476

Query: 475 RFGLVMIKGEP--------------------------------------YQIIDIGMRML 496
           R  LV +   P                                      + ++D  +RML
Sbjct: 477 RMALVTVVQVPAAILPPELLVKARKCAHFLHKYLPEHFPDLVDLVLLGEHALVDFTLRML 536

Query: 497 EPHELFACQGFNPEYII------NNYNG-----KSSKKQQVARVGNSVPPQFAEALTRAN 545
           +  EL   QGF+P+YI+      N   G       +K  Q+  +GNSV P  AE L  AN
Sbjct: 537 KAPELKLAQGFSPDYILDRGLFENQETGHLEWRPINKTDQIRLIGNSVCPDEAEDLIAAN 596

Query: 546 LPEL 549
             +L
Sbjct: 597 AKDL 600